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| --- | ||
| site: freiburg | ||
| tags: [tools] | ||
| title: UseGalaxy.eu Tool Updates for 2024-10-27 | ||
| supporters: | ||
| - denbi | ||
| - elixir | ||
| --- | ||
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| On 2024-10-27, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #484](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#484/) | ||
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| ## Climate Analysis | ||
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| - divand_full_analysis was updated to [77787acbd793](https://toolshed.g2.bx.psu.edu/view/ecology/divand_full_analysis/77787acbd793) | ||
| - landcover_subindicator was updated to [828c02027180](https://toolshed.g2.bx.psu.edu/view/ecology/landcover_subindicator/828c02027180) | ||
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| ## Get Data | ||
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| - argo_getdata was updated to [055a934a380f](https://toolshed.g2.bx.psu.edu/view/ecology/argo_getdata/055a934a380f) | ||
| - argo_getdata was updated to [f3c64a15ee7e](https://toolshed.g2.bx.psu.edu/view/ecology/argo_getdata/f3c64a15ee7e) | ||
| - copernicusmarine was updated to [4de886e6300d](https://toolshed.g2.bx.psu.edu/view/ecology/copernicusmarine/4de886e6300d) | ||
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| ## GIS Data Handling | ||
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| - aquainfra_ogc_api_processes was updated to [1ff618d89af4](https://toolshed.g2.bx.psu.edu/view/ecology/aquainfra_ogc_api_processes/1ff618d89af4) | ||
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| ## Metabolomics | ||
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| - mfassignr_findrecalseries was updated to [18e13043167d](https://toolshed.g2.bx.psu.edu/view/recetox/mfassignr_findrecalseries/18e13043167d) | ||
| - mfassignr_histnoise was updated to [12b63108d645](https://toolshed.g2.bx.psu.edu/view/recetox/mfassignr_histnoise/12b63108d645) | ||
| - mfassignr_histnoise was updated to [5dd25cf1ac0a](https://toolshed.g2.bx.psu.edu/view/recetox/mfassignr_histnoise/5dd25cf1ac0a) | ||
| - mfassignr_isofiltr was updated to [b880fcae60ea](https://toolshed.g2.bx.psu.edu/view/recetox/mfassignr_isofiltr/b880fcae60ea) | ||
| - mfassignr_kmdnoise was updated to [39a642fc9638](https://toolshed.g2.bx.psu.edu/view/recetox/mfassignr_kmdnoise/39a642fc9638) | ||
| - mfassignr_kmdnoise was updated to [634ae07958a2](https://toolshed.g2.bx.psu.edu/view/recetox/mfassignr_kmdnoise/634ae07958a2) | ||
| - mfassignr_mfassign was updated to [0492fff60960](https://toolshed.g2.bx.psu.edu/view/recetox/mfassignr_mfassign/0492fff60960) | ||
| - mfassignr_mfassign was updated to [d5745e78fcfe](https://toolshed.g2.bx.psu.edu/view/recetox/mfassignr_mfassign/d5745e78fcfe) | ||
| - mfassignr_mfassigncho was updated to [59326d3b9c52](https://toolshed.g2.bx.psu.edu/view/recetox/mfassignr_mfassigncho/59326d3b9c52) | ||
| - mfassignr_mfassigncho was updated to [b96a462d9c3f](https://toolshed.g2.bx.psu.edu/view/recetox/mfassignr_mfassigncho/b96a462d9c3f) | ||
| - mfassignr_recal was updated to [861917f1a211](https://toolshed.g2.bx.psu.edu/view/recetox/mfassignr_recal/861917f1a211) | ||
| - mfassignr_recallist was updated to [4f671baab2fd](https://toolshed.g2.bx.psu.edu/view/recetox/mfassignr_recallist/4f671baab2fd) | ||
| - mfassignr_snplot was updated to [7279d7a37c43](https://toolshed.g2.bx.psu.edu/view/recetox/mfassignr_snplot/7279d7a37c43) | ||
| - recetox_aplcms_correct_time was updated to [501a232f3cd5](https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_correct_time/501a232f3cd5) | ||
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| ## QIIME 2 | ||
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| - qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) | ||
| - qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623) | ||
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| ## RNA Analysis | ||
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| - cuffmerge was updated to [04adc9db1581](https://toolshed.g2.bx.psu.edu/view/devteam/cuffmerge/04adc9db1581) | ||
| - featurecounts was updated to [1b851f87fbe0](https://toolshed.g2.bx.psu.edu/view/iuc/featurecounts/1b851f87fbe0) | ||
| - trinity_abundance_estimates_to_matrix was updated to [81a4697677e7](https://toolshed.g2.bx.psu.edu/view/iuc/trinity_abundance_estimates_to_matrix/81a4697677e7) | ||
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| ## Variant Calling | ||
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| - ensembl_vep was updated to [c47ecf0e932d](https://toolshed.g2.bx.psu.edu/view/iuc/ensembl_vep/c47ecf0e932d) | ||
| - snpeff was updated to [ca2b512e8d7c](https://toolshed.g2.bx.psu.edu/view/iuc/snpeff/ca2b512e8d7c) | ||
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| ## Text Manipulation | ||
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| - concatenate_multiple_datasets was updated to [5b1b635232ed](https://toolshed.g2.bx.psu.edu/view/artbio/concatenate_multiple_datasets/5b1b635232ed) | ||
| - concatenate_multiple_datasets was updated to [5b2cc63d7a21](https://toolshed.g2.bx.psu.edu/view/artbio/concatenate_multiple_datasets/5b2cc63d7a21) | ||
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| ## Assembly | ||
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| - hifiasm was updated to [5161f204ba63](https://toolshed.g2.bx.psu.edu/view/bgruening/hifiasm/5161f204ba63) | ||
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| ## Genome Diversity | ||
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| - fasttree was updated to [ef46a404db96](https://toolshed.g2.bx.psu.edu/view/iuc/fasttree/ef46a404db96) | ||
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| ## Metagenomic Analysis | ||
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| - ampvis2_alpha_diversity was updated to [c14c7fd4d1be](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_alpha_diversity/c14c7fd4d1be) | ||
| - ampvis2_boxplot was updated to [61db741e4614](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_boxplot/61db741e4614) | ||
| - ampvis2_core was updated to [4b023017896a](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_core/4b023017896a) | ||
| - ampvis2_export_fasta was updated to [5939a607c306](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_export_fasta/5939a607c306) | ||
| - ampvis2_frequency was updated to [467da4453127](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_frequency/467da4453127) | ||
| - ampvis2_heatmap was updated to [9dab85e62cf2](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_heatmap/9dab85e62cf2) | ||
| - ampvis2_load was updated to [7db90993aa92](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_load/7db90993aa92) | ||
| - ampvis2_merge_ampvis2 was updated to [5c6edb00ef4a](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_merge_ampvis2/5c6edb00ef4a) | ||
| - ampvis2_mergereplicates was updated to [21a8b4e5e300](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_mergereplicates/21a8b4e5e300) | ||
| - ampvis2_octave was updated to [79ea913636fe](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_octave/79ea913636fe) | ||
| - ampvis2_ordinate was updated to [520dd44283ea](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_ordinate/520dd44283ea) | ||
| - ampvis2_otu_network was updated to [4122ff5882e0](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_otu_network/4122ff5882e0) | ||
| - ampvis2_rankabundance was updated to [17b44753a1df](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_rankabundance/17b44753a1df) | ||
| - ampvis2_rarecurve was updated to [30ac301ba3d6](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_rarecurve/30ac301ba3d6) | ||
| - ampvis2_setmetadata was updated to [7c9c6448b57c](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_setmetadata/7c9c6448b57c) | ||
| - ampvis2_subset_samples was updated to [1db7e3d33871](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_subset_samples/1db7e3d33871) | ||
| - ampvis2_subset_taxa was updated to [20a62b3a3038](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_subset_taxa/20a62b3a3038) | ||
| - ampvis2_timeseries was updated to [9c6dbd8a875b](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_timeseries/9c6dbd8a875b) | ||
| - ampvis2_venn was updated to [e85ff12bc025](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_venn/e85ff12bc025) | ||
| - decontam was updated to [33cb918da8d7](https://toolshed.g2.bx.psu.edu/view/iuc/decontam/33cb918da8d7) | ||
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| ## Phylogenetics | ||
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| - hyphy_annotate was updated to [68cd2d8e3840](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_annotate/68cd2d8e3840) | ||
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| ## Virology | ||
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| - varvamp was updated to [d6d746d0d1d0](https://toolshed.g2.bx.psu.edu/view/iuc/varvamp/d6d746d0d1d0) | ||
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| ## None | ||
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| - data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) | ||
| - data_manager_gtdbtk_database_installer was updated to [e7b39a7e0024](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_gtdbtk_database_installer/e7b39a7e0024) | ||
| - data_manager_mapseq was updated to [23511530b8fd](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_mapseq/23511530b8fd) | ||
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| ## hca_sc_label_analysis_tools | ||
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| - decoupler_pseudobulk was updated to [70a5c6f2408d](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/decoupler_pseudobulk/70a5c6f2408d) | ||
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