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@EngreitzLab

Engreitz Lab

Engreitz Lab @ Stanford University

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  1. ABC-GWAS-Paper ABC-GWAS-Paper Public

    Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021

    PostScript 13 2

  2. CRISPRDesigner CRISPRDesigner Public

    Design and selection of gRNAs for pooled CRISPRi tiling screens

    Python 1

Repositories

Showing 10 of 22 repositories
  • ENCODE_rE2G Public

    Enhancer-Gene Prediction Pipeline based on logistic regression and ABC model

    EngreitzLab/ENCODE_rE2G’s past year of commit activity
    Python 5 0 0 0 Updated Dec 12, 2024
  • scE2G Public

    Pipeline to run scE2G

    EngreitzLab/scE2G’s past year of commit activity
    Python 18 MIT 2 2 0 Updated Dec 10, 2024
  • GWAS_E2G_benchmarking Public

    Benchmark enhancer-gene predictions against fine-mapped GWAS variants

    EngreitzLab/GWAS_E2G_benchmarking’s past year of commit activity
    R 0 0 0 0 Updated Nov 28, 2024
  • V2G Public
    EngreitzLab/V2G’s past year of commit activity
    R 2 1 0 0 Updated Nov 21, 2024
  • Variant-EFFECTS Public

    Analysis for Variant-EFFECTS experiments

    EngreitzLab/Variant-EFFECTS’s past year of commit activity
    Python 3 GPL-3.0 0 1 0 Updated Nov 20, 2024
  • CRISPR_comparison Public

    Snakemake workflow for comparing E-G links to experimental data

    EngreitzLab/CRISPR_comparison’s past year of commit activity
    R 12 2 0 0 Updated Nov 20, 2024
  • eQTLEnrichment Public
    EngreitzLab/eQTLEnrichment’s past year of commit activity
    R 1 0 0 0 Updated Nov 8, 2024
  • gene_network_evaluation Public

    Evaluation framework for computationally inferred gene networks from single-cell data.

    EngreitzLab/gene_network_evaluation’s past year of commit activity
    Jupyter Notebook 9 GPL-2.0 7 17 0 Updated Oct 22, 2024
  • IGVF_E2G_jamboree_2024 Public

    Helper scripts for IGVF E2G pillar project jamboree 2024

    EngreitzLab/IGVF_E2G_jamboree_2024’s past year of commit activity
    R 0 1 0 0 Updated Sep 26, 2024
  • cNMF_pipeline Public
    EngreitzLab/cNMF_pipeline’s past year of commit activity
    Jupyter Notebook 4 0 1 0 Updated Jul 17, 2024
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