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1. DEWSeq DEWSeq Public

   R/Bioconductor package for e/iCLIP data analysis

   R 5

2. htseq-clip htseq-clip Public

   a toolset designed for the processing and analysis of eCLIP/iCLIP dataset

   Python 3 1

3. DEWSeq_Bioconductor_docker DEWSeq_Bioconductor_docker Public

   Dockerfile for Bioconductor release and devel versions with all DEWSeq dependecies installed

   Dockerfile

4. pygtftk pygtftk Public

   Forked from dputhier/pygtftk

   A python package and a set of shell commands to handle GTF files

   Python

5. DEWSeq_analysis_helpers DEWSeq_analysis_helpers Public

   This repository contains helper analysis scripts and description of the analysis steps used in i/eCLIP data analysis using DEWSeq

   HTML

6. arnie arnie Public

   Forked from DasLab/arnie

   Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.

   Jupyter Notebook