Mikado should be now setup for CodeCov integration

.gitignore

@@ -1,4 +1,6 @@
 *.pyc
+.#*
+#*
 *.coverage
 sample_data/*loci*
 sample_data/*zip
@@ -74,4 +76,6 @@ sample_data/Daijin
 .eggs/
 Mikado/tests/*fai
 .ipynb_checkpoints/
-Untitled*ipynb
+Untitled*ipynb
+cover/
+coverage.xml

.travis.yml

@@ -21,6 +21,6 @@ install:
   - pip install codecov;
   - pip install -r requirements.txt
 script:
-  - python setup.py nosetests -exe;
+  - coverage run setup.py nosetests -exe;
 after_success:
-  - codecov
+  - codecov 

codecov.yaml

@@ -0,0 +1,26 @@
+codecov:
+  notify:
+    require_ci_to_pass: yes
+
+coverage:
+  precision: 2
+  round: down
+  range: "70...100"
+
+  status:
+    project: yes
+    patch: yes
+    changes: no
+
+parsers:
+  gcov:
+    branch_detection:
+      conditional: yes
+      loop: yes
+      method: no
+      macro: no
+
+comment:
+  layout: "header, diff"
+  behavior: default
+  require_changes: no