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Fixing VCF files, fixing bugs...
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@cyenyxe cyenyxe released this 18 Oct 14:01
v0.4
7cb8211

In addition to the removal of duplicate variants introduced in the previous release, errors in the INFO and samples columns can be fixed now by removing the faulty field from the column. For instance, if an INFO value looks like AN=123;AF=not_a_frequency;DP=345, the fix would transform it into AN=123;DP=345.

Other improvements included in this version are:

  • Support for genomic ploidy different from 2
  • Ensuring all the variants that don't require fixing are written after running the vcf-debugulator
  • Simplified build process using a Docker image (recommended for developers only)

You can download the executables using the links below.

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