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Add VCF 4.4 test files for SVCLAIM #235

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merged 1 commit into from
Mar 20, 2024

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@tcezard tcezard commented Feb 1, 2024

passed_CNV.vcf:

  • tests INFO:CN can be float
  • tests multiple symbolic alleles/SVLEN/SVCLAIM
  • tests SVCLAIM DJ type
  • Test Copy number as genotypes

failed_CNV_001.vcf:

  • Test SVCLAIM Is not D, J or DJ

failed_CNV_002.vcf:

  • Number of SVCLAIM

failed_CNV_003.vcf:

  • SVCLAIM is missing for a DEL symbolic allele

 - tests INFO:CN can be float
 - tests multiple symbolic alleles/SVLEN/SVCLAIM
 - tests SVCLAIM DJ type
 - Test Copy number as genotypes
failed_CNV_001.vcf
 - Test SVCLAIM Is not D, J or DJ
failed_CNV_002.vcf
 - Number of SVCLAIM
failed_CNV_003.vcf
 - SVCLAIM is missing for a DEL symbolic allele
@tcezard tcezard changed the title Add VCF 4.4 test files Add VCF 4.4 test files for SVCLAIM Feb 1, 2024
@tcezard tcezard changed the base branch from master to dev/vcf4.4 March 18, 2024 10:30
@tcezard tcezard merged commit deb90bd into EBIvariation:dev/vcf4.4 Mar 20, 2024
4 checks passed
@tcezard tcezard deleted the vcf4.4/test_files branch May 2, 2024 12:07
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