add monarch sssom mappings

EBISPOT · Sep 11, 2024 · 69c0f4b · 69c0f4b
1 parent 37effaa
commit 69c0f4b
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diff --git a/00_fetch_data/sssom/fetch.sh b/00_fetch_data/sssom/fetch.sh
@@ -2,7 +2,13 @@
 
 rm -f *.sssom.tsv.gz
 
+curl -L https://data.monarchinitiative.org/mappings/latest/gene_mappings.sssom.tsv | gzip > gene_mappings.sssom.tsv.gz
+curl -L https://data.monarchinitiative.org/mappings/latest/hp_mesh.sssom.tsv | gzip > hp_mesh.sssom.tsv.gz
+curl -L https://data.monarchinitiative.org/mappings/latest/mesh_chebi_biomappings.sssom.tsv | gzip > mesh_chebi_biomappings.sssom.tsv.gz
+curl -L https://data.monarchinitiative.org/mappings/latest/mondo.sssom.tsv | gzip > mondo.sssom.tsv.gz
+curl -L https://data.monarchinitiative.org/mappings/latest/umls_hp.sssom.tsv | gzip > umls_hp.sssom.tsv.gz
 curl -L https://data.monarchinitiative.org/mappings/latest/upheno_custom.sssom.tsv | gzip > upheno_custom.sssom.tsv.gz
+
 curl -L https://raw.githubusercontent.com/mapping-commons/mh_mapping_initiative/master/mappings/mp_hp_mgi_all.sssom.tsv | gzip > mp_hp_mgi_all.sssom.tsv.gz
 curl -L https://raw.githubusercontent.com/obophenotype/bio-attribute-ontology/master/src/mappings/oba-efo.sssom.tsv | gzip > oba-efo.sssom.tsv.gz
 curl -L https://raw.githubusercontent.com/obophenotype/bio-attribute-ontology/master/src/mappings/oba-vt.sssom.tsv | gzip > oba-vt.sssom.tsv.gz
diff --git a/00_fetch_data/sssom/gene_mappings.sssom.tsv.gz b/00_fetch_data/sssom/gene_mappings.sssom.tsv.gz
diff --git a/00_fetch_data/sssom/hp_mesh.sssom.tsv.gz b/00_fetch_data/sssom/hp_mesh.sssom.tsv.gz
diff --git a/00_fetch_data/sssom/mesh_chebi_biomappings.sssom.tsv.gz b/00_fetch_data/sssom/mesh_chebi_biomappings.sssom.tsv.gz
diff --git a/00_fetch_data/sssom/mondo.sssom.tsv.gz b/00_fetch_data/sssom/mondo.sssom.tsv.gz
diff --git a/00_fetch_data/sssom/mp_hp_mgi_all.sssom.tsv.gz b/00_fetch_data/sssom/mp_hp_mgi_all.sssom.tsv.gz
diff --git a/00_fetch_data/sssom/oba-efo.sssom.tsv.gz b/00_fetch_data/sssom/oba-efo.sssom.tsv.gz
diff --git a/00_fetch_data/sssom/oba-vt.sssom.tsv.gz b/00_fetch_data/sssom/oba-vt.sssom.tsv.gz
diff --git a/00_fetch_data/sssom/umls_hp.sssom.tsv.gz b/00_fetch_data/sssom/umls_hp.sssom.tsv.gz
diff --git a/00_fetch_data/sssom/upheno_custom.sssom.tsv.gz b/00_fetch_data/sssom/upheno_custom.sssom.tsv.gz