added japanese translation, updated makefile to merge it in at releas…

…e time
EBISPOT · Jul 30, 2020 · ad64dec · ad64dec
1 parent 44e218a
commit ad64dec
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Showing 4 changed files with 351 additions and 145 deletions.
diff --git a/src/ontology/Makefile b/src/ontology/Makefile
@@ -2,24 +2,31 @@ OBO=http://purl.obolibrary.org/obo
 ONT=duo
 BASE=$(OBO)/$(ONT)
 SRC=$(ONT)-edit.owl
+MRG=$(ONT)-merged.owl
 RELEASEDIR=../..
 ROBOT= robot
 OWLTOOLS= owltools
 USECAT= --use-catalog
 
-all: $(ONT).owl $(ONT)-basic.owl $(ONT).csv
+all: $(ONT).owl $(ONT)-basic.owl $(ONT).csv 
 
 test:all
 
+
+prepare-release-local: 
+	cp $(ONT).owl  $(ONT)-basic.owl $(ONT).csv  $(RELEASEDIR) &&\
+	echo "Release files are now in $(RELEASEDIR) - please check locally. Nothing has been added to GH yet."
+
 prepare-release: 
-	$(ROBOT)  reason -i $(SRC) -r ELK relax reduce -r ELK annotate -V $(BASE)/releases/`date +%Y-%m-%d`/$(ONT).owl -o $(ONT).owl
-	cp $(ONT).owl  $(ONT)-basic.owl $(ONT).csv $(RELEASEDIR) &&\
+	cp $(ONT).owl  $(ONT)-basic.owl $(ONT).csv  $(RELEASEDIR) &&\
 	git add $(RELEASEDIR)/*.owl 
-	echo "Release files are now in $(RELEASEDIR) - now you should commit, push and make a release on github"
-
+	echo "Release files are now in $(RELEASEDIR) - now you should commit, push and make a release on github"	
 
-$(ONT).owl: $(SRC)
-	$(ROBOT)  reason -i $< -r ELK relax reduce -r ELK annotate -V $(BASE)/releases/`date +%Y-%m-%d`/$(ONT).owl -o $@
+$(ONT).owl: 
+	#merges in the japanese translation
+	$(ROBOT) merge -i $(SRC) -i $(ONT)-japanese.owl -o $(ONT).owl
+	#build the owl file
+	$(ROBOT)  reason -i $(ONT).owl -r ELK relax reduce -r ELK annotate -V $(BASE)/releases/`date +%Y-%m-%d`/$(ONT).owl -o $@
 
 $(ONT)-basic.owl: $(ONT).owl root-terms.txt
 	$(ROBOT) merge -i $(ONT).owl filter --term-file root-terms.txt --select "annotations self descendants ontology" annotate --ontology-iri $(BASE)-basic.owl -V $(BASE)/releases/`date +%Y-%m-%d`/$(ONT)-basic.owl -o $@
@@ -48,7 +55,7 @@ $(ONT).csv: $(ONT)-basic.owl make-csv.sparql
 #	$(OWLTOOLS) $(USECAT) $< -o -f obo $@
 
 # clone remote ontology locally, performing some excision of relations and annotations
-mirror/%.owl: $(SRC)
+mirror/%.owl: $(MRG)
 	$(OWLTOOLS) $(OBO)/$*.owl --remove-annotation-assertions -l -s -d --remove-dangling-annotations  -o $@
 .PRECIOUS: mirror/%.owl