Release v2.0.0 · EBI-Metagenomics/miassembler

What's Changed

Added decontamination by reference genome on top of host by @mberacochea in #10
MultiQC reports per run set and per study by @mberacochea in #13
Support external data through samplesheet by @KateSakharova in #11
Fire specific config to access external data by @mberacochea in #14
Improved QC and inclusion of end of execution reports by @mberacochea in #15
Improvement of the retry-with-more-memory logic by @SandyRogers in #19
Structure refactor to support both long reads and short reads by @mberacochea in #17
Addition of long-reads pre-assembly qcs by @Ge94 in #16
Fix for the filter ratio threshold logic by @jmattock5 in #22
Private fire support by @mberacochea in #23
Update published contigs by @Ge94 in #25
Include the calculation of a single coverage and coverage depth value by @mberacochea in #28
Added exception for empty contig file by @Ge94 in #30
Added megahit graph to output files by @Ge94 in #29
General bug fixes in miassembler by @Ge94 in #31
Patched the bwamem2 retry policy by @mberacochea in #33
Bugfix in decontamination step - remove extra column from blast output by @Ge94 in #34
Added full support for long reads by @Ge94 in #24
Minor reorganization of docs and removed some debug files by @mberacochea in #38
Update schema_input.json with flye by @KateSakharova in #39

Full Changelog: v1.0.0...v2.0.0