Rename the decontaminated.txt file to SRRXXX_decontaminated_contigs.txt

EBI-Metagenomics · May 30, 2024 · a80aac1 · a80aac1
1 parent 6e1a00e
commit a80aac1
Showing 1 changed file with 4 additions and 1 deletion.
diff --git a/conf/modules.config b/conf/modules.config
@@ -304,7 +304,10 @@ process {
                 mode: params.publish_dir_mode,
                 failOnError: true,
                 saveAs: {
-                    return "${study_reads_folder()}/assembly/${meta.assembler}/${meta.assembler_version}/decontamination/decontaminated.txt";
+                    filename -> {
+                        def output_file = new File(filename);
+                        return "${study_reads_folder()}/assembly/${meta.assembler}/${meta.assembler_version}/decontamination/${output_file.name}";
+                    }
                 }
             ]
         ]