Merge pull request #41 from EBI-Metagenomics/bugfix/v2.1.0-gtdbtk-con…

…tainer Change base image for GTDB-tk 2.3.0
EBI-Metagenomics · May 30, 2023 · c1a4c38 · c1a4c38
2 parents 9dc3ed4 + 6e6f880
commit c1a4c38
Showing 1 changed file with 1 addition and 4 deletions.
diff --git a/containers/gtdb-tk/Dockerfile b/containers/gtdb-tk/Dockerfile
@@ -1,14 +1,11 @@
-FROM continuumio/miniconda3
+FROM quay.io/biocontainers/gtdbtk:2.3.0--pyhdfd78af_2
 
 LABEL software="GTDB-Tk"
 LABEL software.version="2.3.0"
 LABEL description="A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes."
 LABEL website="https://github.com/Ecogenomics/GTDBTk"
 LABEL license="GPLv3"
 
-RUN conda update --all --yes && \
-    conda create -n gtdbtk-2.3.0 -c conda-forge -c bioconda gtdbtk=2.3.0
-
 # Workdir
 RUN mkdir /data
 WORKDIR /data