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Hybrid work from home and office
:electron:
Hybrid work from home and office
4 followers · 4 following

Achievements

Achievement: Pull SharkAchievement: Quickdraw

Achievements

Achievement: Pull SharkAchievement: Quickdraw

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Organizations

@theLongLab

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DeshanPerera/README.md

Hi! My name is Deshan Perera

I am currently a Ph.D. Candidate (specialization in Bioinformatics) in the Department of Biochemistry and Molecular Biology, Cumming School of Medicine at the University of Calgary, Canada supervised by Prof. Quan Long.

My main research focus is on within-host evolution and pathogen genomics. Recently, my focus has expanded into within host evolution of cancer. My areas of expertise lie in understanding evolutionary dynamics within organisms and developing high-performance computational solutions to analyze these problems.

🥏 Skills

  • Languages: CUDA, C, C++, Java, R
  • Tools & Technologies: Anaconda, Docker, TensorFlow

🛰️ Personal website

  • For more information on what I am working on please visit my webpage.

🛎️ How to reach me

⭐ Notable repos

If you find the following repos useful in your work on evolutionary studies feel free to leave a ⭐ star and cite them in your publications.

Repo Stats Repo Stats Repo Stats

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  1. theLongLab/CATE theLongLab/CATE Public

    A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests on large scale genomic data.

    Cuda 11

  2. theLongLab/TransCOVID theLongLab/TransCOVID Public

    A dedicated pipeline designed for the inference of COVID19 transmission networks in a population complete with the prediction of unsampled sources of infection using SARS-CoV-2 genomic sequences. O…

    R 4

  3. theLongLab/Transmission_Analyzer theLongLab/Transmission_Analyzer Public

    A pipeline that enables the prediction of HIV transmission and Infection date inference. The provided R code can be utilised to analyse a BEAST2 generated MCC tree to predict novel transmission clu…

    R 3