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Update run_scanpyQC_rna.py to fix scrublet merge issue in ingest #277

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merged 2 commits into from
May 13, 2024

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deevdevil88
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Hi this change fixes the issue raised now by @giuliaelgarcia #276

This issue was also face by Jarne in the lab. Both had upto date panpipes from github on conda environment.

we tested it quickly and this now works.

@deevdevil88 deevdevil88 requested a review from bio-la May 9, 2024 16:15
@deevdevil88 deevdevil88 changed the title Update run_scanpyQC_rna.py to fix scruble merge issue in ingest Update run_scanpyQC_rna.py to fix scrublet merge issue in ingest May 9, 2024
@deevdevil88 deevdevil88 merged commit ac0d931 into main May 13, 2024
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@deevdevil88 deevdevil88 deleted the deevdevil88-patch-1 branch May 13, 2024 12:43
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2 participants