13th August 2020

Meeting 13/08/2020

Agenda

Presentation: N/A

Chair: Yunguan

Minutes: Nina Montana Brown

Attendance:

Yunguan Fu YF

Ester Bonmati EB

Zac Baum ZB

Shaheer Saeed SS

Adria Casamitjana AC

Nina Montana Brown NMB

Apologies:

Yipeng Hu

Qianye Yang QY

Matt Clarkson MC

Alex Grimwood AG

Zhe Min ZM

Remi Delaunay RD

Updates and next tasks

Who?	Discussion Points	Next
Zac Baum
Ester Bonmati		Finish demo and merge to master
Adria Casamitjana
Matt Clarkson
Remi Delaunay
Yunguan Fu	Test is nearly perfect, maybe some tests need to be improved. This week all bugs should be fixed, then it is important to recheck all the demos, as some major changes have happened (data loader, prediction output, saving in nifti1 format)	Improve docs Automate demo test
Alex Grimwood	Happy to begin revising docs, will raise/assign issues over the next week
Yipeng Hu	The joss paper review takes at most a few weeks. In order to get this ready before miccai, so, the “DeepReg-beta will be released in Autumn 2020”. Demo are almost all ready (ester is the last planned “almost there”) Please demo-makers and others all check the requirement again (now in doc) and raise issues - you can group them to demo_paired_mrus_prostate issues if easier to address in one go. Consider change the demo authors to DeepReg Core Dev Team, with a corresponding author info;. Ideally we need one more demo for grouped loader, cardio application if possible - any ideas/suggestions? open data set is the key. Should we clean up the dependencies? Separate dev and user installation - edu-challenge had quite a few conflicts with modern “data science” packages - most, if not all are coming from testing/doc; Feedback on doc, is it clear and how to improve. (Zac, Alex, Matt) Suggest to have a meeting next week as it is close to R1 Pypi package anyone?	Use excel to get the availability of dev team
Nina Montana Brown	Sphinx docs Pypi Release
Saeed Shaheer		Upload final ckpts for two demos
Qianye Yang
Zhe Min

Minutes

YF:

• Thanks all for contributing to tests!

• Data loader tests need to be improved - Yunguan to raise tickets about things he considers are missing. Good to do this before release.

• This week - resolving bugs and seem to be compatible with demos.

• Next week: improve docs and demos.

• Automate demo testing (not to be included in CI) - how to guarantee backwards compatibility with changes in repo? A script to run.

YH (NMB discusses):

• Review docs, demos: raise tickets for cross review.

• PYPI: Zac + Nina to investigate how.

SS:

• Nothing to discuss: demos added, ckpts to be added to model zoo this week.

YF:

• Meeting next week to wrap up pre R1.