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Compile FANS as a library for multiscale coupling #23

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Compile FANS as a library for multiscale coupling #23

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IshaanDesai
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@IshaanDesai IshaanDesai commented Sep 21, 2024 •
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In a multiscale simulation, FANS would be coupled to a macro-scale simulation. This coupling will be done using preCICE and the Micro Manager. For such a coupling, FANS needs to be compiled as a library with a pre-defined API. This API is described in https://precice.org/tooling-micro-manager-prepare-micro-simulation.html

This PR adds functionality for FANS to be coupled as a library. The original contribution is done by @tjwsch.

siggmo added 30 commits June 26, 2024 18:54
@siggmo
add new features to CMakeLists.txt and adapt modern best practices
315e12a
@siggmo
Add Language C to project to allow HDF5 to compile its C parts
87a77d4
@siggmo
Add autoformat file for CMake, Presets and a Doxyfile
cbc6ccb
@siggmo
remove unnecessary includes and links, replace linker flag by cmake c…
dd3c840 
…ommand for GNU math lib
@siggmo
replace -fopenmp by modern CMake way
12264a3
@siggmo
move compiler options to target based locations
a30a1e5
@siggmo
Use FFTW3 find script and find_package(MPI)
3cab37a
@siggmo
add FindFFTW3.cmake (was hidden by .git
60f4763 
ignore before)
@siggmo
change output name of shared lib from libFANS_FANS.so to libFANS.so
e55a376
@siggmo
ignore .cmake folder generated by CLion
eaadfb7
@siggmo
Dockerfile for containerized build and publishable standalone selfcon…
c228d5e 
…tained FANS container
@siggmo
add another container stage for dev-env, add docker.yaml github actio…
6919555 
…n and update readme accordingly.
@siggmo
fix typo
7362bab
@siggmo
Merge branch 'main' into rework_build_system
8f4799a
@siggmo
Merge branch 'main' into rework_build_system
ceade72
@siggmo
fix missing CMD start command for container dev-env
d508e1b
@siggmo
Make use of auto-determined dependencies in runtime docker image (red…
adf98d4 
…uces size from 495MB to 161MB). Also add dev deps to dev package explicitly. And update docker.yaml workflow
@siggmo
Set up cross-compilation for arm64 using Docker buildx
28801fa
@siggmo
fix COMPONENT_PACKAGE_DEPENDS (needs to be uppercase), and add openmp…
0a7fdab 
…i-bin to runtime deps
@siggmo
rename packages and edit descriptions
1bdfdd6
@siggmo
Add CI workflow to build and package FANS
d6418b0
@siggmo
update version of publish artifacts action
6ba1430
@siggmo
Merge branch 'main' into rework_build_system
bae0687
@siggmo
Add remaining dependencies to FANSConfig.cmake and include FindFFTW3.…
3c4daf3 
…cmake in install step
@siggmo
run autoformat
6687675
@siggmo
Reoarganize CMake files, fix install calls, add found message
6404b14
@siggmo
remove COMPONENT statement in install(TARGETS ... INCLUDES) since tha…
07d5ff1 
…t's not supported there and erraneously add include paths called COMPONENT
@siggmo
cmake overhaul
b01390b
@siggmo
Add Docker images for building FANS and instructions in the README.md
229ba7d
@siggmo
clean up comments
726fbb0
@IshaanDesai IshaanDesai added the enhancement New feature or request label Sep 21, 2024
@IshaanDesai IshaanDesai self-assigned this Sep 21, 2024
@IshaanDesai IshaanDesai changed the title Add functionality to compile FANS as a library to be used for coupling Compile FANS as a library for multiscale coupling Sep 22, 2024
IshaanDesai and others added 21 commits September 23, 2024 12:43
@IshaanDesai
CMake edit temporarily
da4bd81
@IshaanDesai
Formatting
f2bcd60
@siggmo
restructure micromanager part of CMakeLists.txt file
a56d3bb
@IshaanDesai
Merge branch 'develop' into lib_micro_sim
33c6191
@siggmo
Merge branch 'develop' into lib_micro_sim2
fdeb468
@siggmo
Align with current state on develop branch
418f46f
@siggmo
Merge branch 'lib_micro_sim2' into lib_micro_sim
e793ffe
@siggmo
Merge branch 'develop' into lib_micro_sim
aea7930
@IshaanDesai
Remove unnecessary code and get homogenized stress only by access
a707673
@IshaanDesai
Remove thermal micro simulation code as it is just a copy of the mech…
cdfc48e 
…anics code
@IshaanDesai
Remove duplicate micro.hpp from include/
5fc5691
@IshaanDesai
Remove more redundant code and fix types
62e927d
@IshaanDesai
Streamline code in micro.hpp and micro.cpp
f515e5e
@IshaanDesai
A first implementation of numerically calculating the tangent stiffne…
f5aecb3 
…ss matrix. NOT WORKING
@IshaanDesai
First working version with logically correct stiffness matrix C
3bdae1b
@IshaanDesai
Bump clang-format version in pre-commit config
f3260c2
@IshaanDesai
Merge branch 'develop' into lib_micro_sim
57d22bb
@IshaanDesai
Formatting
cbdcccd
@IshaanDesai
Rename folder with content for micro library to pyfans
6bb7fde
@IshaanDesai
Remove files related to thermal test of micro simulation library
96dc4a8
@IshaanDesai
Replace Eigen Matrix row.begin and row.end with simpler functionality
194da8a
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@IshaanDesai @siggmo @sanathkeshav1 @tjwsch