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  • Tübingen University

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  1. multipheno_GWAS multipheno_GWAS Public

    Scripts for running multi-phenotype GWAS using mixed models with the R package "rrBLUP". Additional functionality includes phenotype transformations and enrichment of a-priori candidate genes.

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  2. BinAC_varcalling BinAC_varcalling Public

    Workflow for read mapping and variant calling (GATK4) from Whole Genome Sequencing data of non-model species.

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  3. WGBS_downstream WGBS_downstream Public

    Collection of scripts for downstream analysis of methylation bedgraph files produced by the EpiDiverse [WGBS pipeline](https://github.com/EpiDiverse/wgbs)

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  4. popDMRs_refine_VCA popDMRs_refine_VCA Public

    Workflow for downstream analysis of EpiDiverse DMR pipeline (https://github.com/EpiDiverse/dmr) results to merge and refine comparison-specific DMRs obtaining population-level DMRs and use them for…

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  5. EWAS EWAS Public

    Code for conducting Epigenome Wide Association Studies (EWAS) including high-quality visualization and other downstream analysis.

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  6. Exoreads_treasure Exoreads_treasure Public

    This repo contains scripts to extract exogenous reads, not mapping to the target species, from large sequencing datasets

    Shell