Danko-Lab / F1_8Organs Public

Genetic Dissection of the RNA Polymerase II Transcription Cycle with ChRO-seq from F1 hybrid mice

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Name		Name	Last commit message	Last commit date
Latest commit History 8 Commits
initiation		initiation
pause		pause
termination		termination
00_F1_Tissues_proseq_pipeline.bash		00_F1_Tissues_proseq_pipeline.bash
01_F1Ts_AlleleHMM.bsh		01_F1Ts_AlleleHMM.bsh
AllelicBiase_expressionLevel.bsh		AllelicBiase_expressionLevel.bsh
F1_TSN_Generate_BigWig.sh		F1_TSN_Generate_BigWig.sh
Find_consistent_blocks_v3.bsh		Find_consistent_blocks_v3.bsh
Genetics_or_imprinting_v2.bsh		Genetics_or_imprinting_v2.bsh
Imprinted_figures.R		Imprinted_figures.R
README.md		README.md
Tunit_predict_manuscript.sh		Tunit_predict_manuscript.sh
getCounts_skipfirst500.R		getCounts_skipfirst500.R
getNonBiasedHighest_Biased_AllelicBiaseDistribution.R		getNonBiasedHighest_Biased_AllelicBiaseDistribution.R
getNonBiasedHighest_Biased_TotalReadCountRatio.R		getNonBiasedHighest_Biased_TotalReadCountRatio.R
hmm.prototypes.R		hmm.prototypes.R
run.hmm.h5_F1bedgraph.R		run.hmm.h5_F1bedgraph.R
sepIndex_beforeDeduplicate.py		sepIndex_beforeDeduplicate.py