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Refactoring to read more file types#73

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DanChaltiel merged 60 commits intomainDanChaltiel/EDCimport:mainfrom read_allDanChaltiel/EDCimport:read_allCopy head branch name to clipboardOct 23, 2024

+1,851-388

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Commits on Oct 4, 2024

• separate read files

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• add dots to utils functions

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Commits on Oct 10, 2024

• improved add_class()

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• add simple snapshot test for read_trialmaster()

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• rewrite sas_formats application

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• fixed warning in lastnews_table

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• improve assert_file_exists

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• simplify read_all_xpt()

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Commits on Oct 11, 2024

• separate warnings

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• use .update_lookup in read_tm

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Commits on Oct 18, 2024

• fixes for CHK

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• typo

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• add class to assertion errors

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• modularize read_trialmaster()

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• don't snapshot the database size

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Commits on Oct 19, 2024

• use rbind in edc_example()

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• bugfix get_label with POSIXlt

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• Create read_all_csv.R

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• add tests for CSV

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Commits on Oct 20, 2024

• more tests for csv

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• Update trialmaster-simple.md

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• test_that read_all_csv() works with external labels

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• doc read_all_csv()

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• undo

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• add guess_read_function()

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• improve .read_all

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• rewrite .flatten_error_columns()

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• .add_lookup_and_date

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• Update read_all_csv.R

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• minor tests update

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• fixed test-trialmaster.R

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• read_all_xpt rename directory to path

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• read_all_xpt datetime_extraction="guess"

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• format

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• Update dev version (Github Actions)

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• Update helper-init.R

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• Merge branch 'read_all' of https://github.com/DanChaltiel/EDCimport into read_all

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• Update bump_dev_version.yaml

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• improve .apply_label_lookup

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• add .read_format_lookup()

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• allow reading read SAS formats from a lookup file

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Commits on Oct 22, 2024

• add control over labels in read_all_csv()

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• rename options in read_all_xpt()

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• doc

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• dont snapshot the version

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• autoimport

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• fixed .flatten_error

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• fixed importfrom

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• fixed tests

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• fixes for check

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Commits on Oct 23, 2024

• add read_all_sas()

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• apply .locate_file in read_all_xpt() too

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• minor formatting

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• doc

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• Merge branch 'main' into read_all

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• clean for check

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• Merge branch 'read_all' of https://github.com/DanChaltiel/EDCimport into read_all

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• clean for check

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• fix tests

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• Update _pkgdown.yml

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