bad chrom: 100

[cfz1998]

## /home/chaofan/software/EIG/bin/convertf version: 5000
warning (mapfile): bad chrom: 100       100_1047        0       1047
warning (mapfile): bad chrom: 100       100_1106        0       1106
warning (mapfile): bad chrom: 100       100_1221        0       1221
warning (mapfile): bad chrom: 100       100_1265        0       1265
warning (mapfile): bad chrom: 100       100_1752        0       1752
warning (mapfile): bad chrom: 100       100_10008       0       10008
warning (mapfile): bad chrom: 100       100_10054       0       10054
warning (mapfile): bad chrom: 100       100_10135       0       10135
warning (mapfile): bad chrom: 100       100_10201       0       10201
warning (mapfile): bad chrom: 100       100_12772       0       12772
Segmentation fault (core dumped)

Hi! @MatthewMah

How to fix this error?
Thank you for your reply!

[cfz1998]

transger.conf

##config file

genotypename:    chr_rename.ID.vcf.ped
snpname:         chr_rename.ID.vcf.map # or example.map, either works
indivname:       chr_rename.ID.vcf.ped # or example.ped, either works
outputformat:    EIGENSTRAT
genotypeoutname: MY.eigenstratgeno
snpoutname:      MY.snp
indivoutname:    MY.ind
familynames:    NO

[bumblenick]

Chromosome numbers are supposed to be small integers. You have 100 which is too large. You need to fix this somehow. Nick

…

On Wed, May 17, 2023 at 2:38 AM cfz1998 ***@***.***> wrote: ## /home/chaofan/software/EIG/bin/convertf version: 5000 warning (mapfile): bad chrom: 100 100_1047 0 1047 warning (mapfile): bad chrom: 100 100_1106 0 1106 warning (mapfile): bad chrom: 100 100_1221 0 1221 warning (mapfile): bad chrom: 100 100_1265 0 1265 warning (mapfile): bad chrom: 100 100_1752 0 1752 warning (mapfile): bad chrom: 100 100_10008 0 10008 warning (mapfile): bad chrom: 100 100_10054 0 10054 warning (mapfile): bad chrom: 100 100_10135 0 10135 warning (mapfile): bad chrom: 100 100_10201 0 10201 warning (mapfile): bad chrom: 100 100_12772 0 12772 Segmentation fault (core dumped) Hi! @MatthewMah <https://github.com/MatthewMah> How to fix this error? Thank you for your reply! — Reply to this email directly, view it on GitHub <#88>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AEE77B4J4WOSD46LRM4WW3DXGRW7FANCNFSM6AAAAAAYETYFHQ> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>