WIP: CLI11 to replace Boost program option

[kerautret]

PR Description/instructions (Work In Progress)

Main steps to transform each tool:

1. Removes the boost program options related headers and replace them with CLI1.hpp:

2. Comment in order to remove the option descriptions and parser parts, like for instance here:

3. Apply the CLI11 format with shorter style:

Start with the CLI object:

And then add the options:

4. Check the executable with at least basic examples.

5. Update the documentation

  Just copy past the help result you obtain in your terminal.

6. Push your commit on the current branch or apply a Pull Request on it:

https://github.com/kerautret/DGtalTools/tree/CLI11

Progression:

• Transform all tools of convertors:

  • HDF52vol
  • convertVol
  • dicom2vol
  • freeman2img
  • freeman2sdp
  • heightfield2shading
  • heightfield2vol
  • img2freeman
  • imgAddNoise
  • itk2vol
  • longvol2vol
  • mesh2heightfield
  • mesh2vol
  • ofs2off
  • raw2HDF5
  • raw2vol
  • sdp2vol
  • slice2vol
  • vol2heightfield
  • vol2obj
  • vol2raw
  • vol2sdp
  • vol2slice
  • vol2vox
  • volBoundary2obj
  • vox2vol

• Transform all tools of estimators:

  • 2dLocalEstimators
  • 3dCurveTangentEstimator
  • 3dLocalEstimators
  • curvatureBC
  • curvatureMCMS
  • curvatureScaleSpaceBCC
  • eulerCharacteristic
  • generic3dNormalEstimators
  • lengthEstimators
  • statisticsEstimators
  • tangentBC
  • vol2normalField
  • volSurfaceRegularization

• Transform all tools of generators:

  • 3dParametricCurveDigitizer
  • contourGenerator
  • shapeGenerator

• Transform all tools of geometricTransform:

  • rigidTransform2D
  • rigidTransform3D

• Transform all tools of imageProcessing:

  • at-u0-v1
  • at-u2-v0
  • atv-u2-v0

• Transform all tools of visualisation

  • 2dCompImage
  • 3dCompSurfelData
  • 3dCurvatureViewer
  • 3dCurvatureViewerNoise
  • 3dCurveViewer
  • 3dDisplaySurfelData
  • 3dHeightMapViewer
  • 3dImageViewer
  • 3dImplicitSurfaceExtractorBy4DExtension
  • 3dImplicitSurfaceExtractorByThickening
  • 3dSDPViewer
  • 3dVolBoundaryViewer
  • 3dVolViewer
  • displayContours
  • meshViewer
  • patternTriangulation
  • sliceViewer

• Transform all tools of volumetric:

  • 3dVolMarchingCubes
  • criticalKernelsThinning3D
  • homotopicThinning3D
  • volAddBorder
  • volAddNoise
  • volCComponentCounter
  • volCrop
  • volFillInterior
  • volFlip
  • volImageMetrics
  • volIntensityScale
  • volMask
  • volReSample
  • volSegment
  • volShapeMetrics
  • volSubSample
  • volTrValues

Checklist

• Doxygen documentation of the code completed (classes, methods, types, members...).
• Main tool doxygen documentation (following existing documentation of DGtalTools documentation.
• Check if it follows the tools structure described in CONTRIBUTING.md
• New entry in the ChangeLog.md added.
• Update the readme with potentially a screenshot of the tools if it applies.
• No warning raised in Debug cmake mode (otherwise, Travis C.I. will fail).

[dcoeurjo]

Youhou !! 🎉🎉🎉

[dcoeurjo]

thanks @kerautret and @ngophuc for this impressive work

[dcoeurjo]

Huge thank :) merging