Merge pull request #1721 from BDoignies/GHActionsPython

Gh actions for python

.github/workflows/pythonBindings-PR.yml

@@ -0,0 +1,112 @@
+name: CI Python bindings (linux/macOS/windows)
+
+on:
+  pull_request:
+    branches: [ master ]
+
+env:
+  # Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.)
+  TESTBLACKLIST: "(testLinearStructure|testIntegerConverter|testArithmeticalDSSComputerOnSurfels)"
+  CONFIG_GLOBAL:  -DBUILD_EXAMPLES=false -DBUILD_TESTING=false -DWITH_EIGEN=true
+  CONFIG_PYTHON:  -DDGTAL_WRAP_PYTHON=ON -DDGTAL_BUILD_TESTING_PYTHON=ON
+  CONFIG_LINUX:
+  CONFIG_MAC:
+  CONFIG_WINDOWS: -DWITH_OPENMP=true -DENABLE_CONAN=true -DCMAKE_C_COMPILER="cl.exe" -DCMAKE_CXX_COMPILER="cl.exe"
+
+jobs:
+  build:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macOS-latest, windows-latest]
+        python-version: ["3.11"]
+        BUILD_TYPE: [Release]
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 1
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v4
+        with: 
+          python-version: ${{ matrix.python-version }}
+
+      - name: Installing dependancies (Linux)
+        if: matrix.os == 'ubuntu-latest'
+        run: |
+          sudo apt-get update
+          sudo apt-get install zsh libqglviewer-dev-qt5 libboost-dev libcgal-dev ninja-build libhdf5-serial-dev libboost-dev libcairo2-dev libgmp-dev libfftw3-dev libinsighttoolkit4-dev xorg-dev libglu1-mesa-dev freeglut3-dev mesa-common-dev
+      
+      - name: Installing dependancies (macOS)
+        if: matrix.os == 'macOS-latest'
+        run: brew install boost ninja gmp libomp ccache cgal
+
+      - name: Install dependancies (conan - Windows 1/2)
+        if: matrix.os == 'windows-latest'
+        id: conan
+        uses: turtlebrowser/get-conan@main
+        with:
+          version: 1.57.0
+
+      - name: Install dependancies (conan - Windows 2/2)
+        if: matrix.os == 'windows-latest'
+        run: conan profile new default --detect
+
+      - uses: actions/cache@v3
+        if: matrix.os == 'windows-latest'
+        with:
+          path: ~/.conan
+          key: ${{ runner.os }}-conan-${{ matrix.BUILD_TYPE }}
+
+
+      - name: Create Build Environment
+        run: cmake -E make_directory ${{runner.workspace}}/build
+
+      - name: Configure CMake (Linux)
+        if: matrix.os == 'ubuntu-latest'
+        shell: bash
+        working-directory: ${{runner.workspace}}/build
+        run: cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=${{ matrix.BUILD_TYPE }} $CONFIG_PYTHON $CONFIG_GLOBAL $CONFIG_LINUX -G Ninja
+
+      - name: Configure CMake (macOS)
+        if: matrix.os == 'macOS-latest'
+        shell: bash
+        working-directory: ${{runner.workspace}}/build
+        run: cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=${{ matrix.BUILD_TYPE }} $CONFIG_PYTHON $CONFIG_GLOBAL $CONFIG_MAC -G Ninja
+
+      - name: Configure CMake (Windows)
+        if: matrix.os == 'windows-latest'
+        shell: bash
+        working-directory: ${{runner.workspace}}/build
+        run: cmake $GITHUB_WORKSPACE -DCMAKE_BUILD_TYPE=${{ matrix.BUILD_TYPE }} $CONFIG_PYTHON $CONFIG_GLOBAL $CONFIG_WINDOWS
+
+
+      - name: Build
+        shell: bash
+        working-directory: ${{runner.workspace}}/build  
+        # Execute the build.  You can specify a specific target with "--target <NAME>"
+        run: cmake --build . --config ${{ matrix.BUILD_TYPE }} --parallel 8
+
+      - name: Import module Test 
+        shell: bash
+        working-directory: ${{runner.workspace}}/build
+        run: |
+          python -c "import dgtal"
+
+      - name: Install python dependancies
+        shell: bash
+        run: |
+          python -m pip install pytest    
+          python -m pip install numpy
+          python -m pip install itk 
+
+      - name: Run unit tests
+        shell: bash
+        working-directory: ${{runner.workspace}}/build  
+        run: | 
+          ctest -R python -C ${{ matrix.BUILD_TYPE }} -V --output-on-failure
+
+
+      

.github/workflows/pythonBindings-Pypi.yml

@@ -0,0 +1,159 @@
+name: Deploying to pypi (linux/macOS/windows)
+
+on:
+  push:
+    tags: 
+      - '*' # TODO: set filter here if multiple tags are required
+
+env:
+  # Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.)
+  TESTBLACKLIST: "(testLinearStructure|testIntegerConverter|testArithmeticalDSSComputerOnSurfels)"
+  # No options, setup.py already has it all !
+  CONFIG_GLOBAL: 
+  CONFIG_LINUX:
+  CONFIG_MAC:
+  CONFIG_WINDOWS:
+
+jobs:
+  build:
+    if: startsWith(github.ref, 'refs/tags/') # Only if tagged
+    runs-on: ${{ matrix.os }}
+    environment: deploy
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macOS-latest, windows-latest]
+        python-version: ["3.10", "3.11"]
+        BUILD_TYPE: [Release]
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 1
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v4
+        with: 
+          python-version: ${{ matrix.python-version }}
+
+      - name: Installing dependancies (Linux)
+        if: matrix.os == 'ubuntu-latest'
+        run: |
+          sudo apt-get update
+          sudo apt-get install zsh libqglviewer-dev-qt5 libboost-dev libcgal-dev ninja-build libhdf5-serial-dev libboost-dev libcairo2-dev libgmp-dev libfftw3-dev libinsighttoolkit4-dev xorg-dev libglu1-mesa-dev freeglut3-dev mesa-common-dev
+      
+      - name: Installing dependancies (macOS)
+        if: matrix.os == 'macOS-latest'
+        run: brew install boost ninja gmp libomp ccache cgal
+
+      - name: Install dependancies (conan - Windows 1/2)
+        if: matrix.os == 'windows-latest'
+        id: conan
+        uses: turtlebrowser/get-conan@main
+        with:
+          version: 1.57.0
+
+      - name: Install dependancies (conan - Windows 2/2)
+        if: matrix.os == 'windows-latest'
+        run: conan profile new default --detect
+
+      - uses: actions/cache@v3
+        if: matrix.os == 'windows-latest'
+        with:
+          path: ~/.conan
+          key: ${{ runner.os }}-conan-${{ matrix.BUILD_TYPE }}
+
+      - name: Install python dependancies
+        shell: bash
+        run: |
+          python -m pip install cmake
+          python -m pip install ninja
+          python -m pip install delocate
+          python -m pip install scikit-build
+
+      - name: Setting build informations (Linux)
+        if: matrix.os == 'ubuntu-latest'
+        shell: bash
+        working-directory: wrap/deploy  
+        run: |
+          sed -i "1s/.*/VERSION = '${{ github.ref_name }}'/" dgtalVersion.py
+          cat dgtalVersion.py
+
+      - name: Setting build informations (Mac os)
+        if: matrix.os == 'macOS-latest'
+        shell: bash
+        working-directory: wrap/deploy  
+        run: |
+          # Note the emtpy strings required on macos !
+          sed -i '' "1s/.*/VERSION = '${{ github.ref_name }}'/" dgtalVersion.py
+          cat dgtalVersion.py
+
+      - name: Setting build informations (Windows)
+        if: matrix.os == 'windows-latest'
+        shell: bash
+        working-directory: wrap/deploy  
+        run: |
+          sed -i "1s/.*/VERSION = '${{ github.ref_name }}'/" dgtalVersion.py
+          cat dgtalVersion.py  
+ 
+      - name: Building whl
+        shell: bash
+        working-directory: wrap/deploy  
+        run: |
+          python setup.py bdist_wheel --build-type ${{ matrix.BUILD_TYPE }} -G Ninja
+
+      - name: Verifying wheel (Install - 1/2) 
+        shell: bash
+        working-directory: wrap/deploy  
+        run: |
+          python -m pip install dist/* # Naming would be complicated...
+      
+      - name: Verifying wheel (Install - 2/2)
+        shell: bash
+        working-directory: wrap/tests
+        run: |
+          python -m pip install pytest
+          pytest .
+
+      - name: Repairing Linux Wheel (autitwheel - linux -> manylinux)
+        if: matrix.os == 'ubuntu-latest'
+        shell: bash
+        working-directory: wrap/deploy
+        run: |
+          python -m pip install auditwheel 
+          sudo apt-get install patchelf
+          auditwheel repair -w dist/ --plat manylinux_2_35_x86_64 dist/* # Add shared libraries to .whl
+          rm dist/*-linux_$(uname -p).whl   # Removes shared lib before upload
+          
+
+      - name: Store the distribution packages
+        uses: actions/upload-artifact@v3
+        with:
+          name: python-package-distributions
+          path: wrap/deploy/dist/
+
+  publish-to-testpypi:
+    name: Publish Python 🐍 distribution 📦 to TestPyPI
+    if: startsWith(github.ref, 'refs/tags/')
+    needs:
+    - build
+    runs-on: ubuntu-latest
+
+    environment:
+      name: deploy-pypi
+      url: https://pypi.org/p/dgtal
+
+    permissions:
+      id-token: write  # IMPORTANT: mandatory for trusted publishing
+
+    steps:
+    - name: Download all the dists
+      uses: actions/download-artifact@v3
+      with:
+        name: python-package-distributions
+        path: dist/
+
+    - name: Publish distribution 📦 to TestPyPI
+      uses: pypa/gh-action-pypi-publish@release/v1
+
+

CONTRIBUTORS

@@ -33,3 +33,4 @@ Robin Lamy <robin.lamy1@grenoble-inp.org>
 Baptiste GENEST <baptistegenest@gmail.com>
 Jeremy Fix <https://github.com/jeremyfix>
 Colin Weill--Duflos <colin.weill-duflos@univ-smb.fr>
+Bastien Doignies <bastien.doignies@liris.cnrs.fr>

ChangeLog.md

@@ -21,6 +21,8 @@
 - *General*
   - Renaming AUTHORS→CONTRIBUTORS for HAL (David Coeurjolly,
     [#1699](https://github.com/DGtal-team/DGtal/pull/1699))
+  - Python bindings and Pypi deploy are now handled by Github-Actions (Bastien Doignies,
+    [#1721](https://github.com/DGtal-team/DGtal/pull/1721))
 
 - *IO*
   - New method to change the mode of the light position in Viewer3D (fixed to