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Update dcan_bold_processing, ExecutiveSummary; add --session-id option, more
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@madisoth madisoth released this 03 Dec 23:41
v0.1.0
c2596af

NOTE: Dockerhub release of this and future abcd-hcp-pipeline versions are at the new University of Minnesota DCAN repo: https://hub.docker.com/repository/docker/dcanlabs/abcd-hcp-pipeline Prior releases will continue to be available at https://hub.docker.com/repository/docker/dcanlabs/abcd-hcp-pipeline.

NOTE 2: Though image processing until the DCANBOLDProcessing state is unaltered from previous versions (v0.0.0 through v0.0.4), intermediate and output filenames from the FMRIVolume stage onward have changed. Due to this, if reprocessing data previously processed on an older pipeline version, we recommend first backing up or removing the old output, then running the pipeline from the beginning. It is also possible to rerun previously processed data starting at FMRIVolume by deleting all directories in <sub>/<ses>/files except T1w, T2w (if applicable), and MNINonLinear (with the exception of MNINonLinear/Results, which should be deleted).

Changes from v0.0.4:

  • regular expressions for extracting BIDS fields from filenames revised for consistency with dcan_bold_processing, this fixes several issues with BIDS task and run naming in v0.0.4 and prior.

  • new option --session-id to filter BIDS input to a specific session or list of sessions

  • timeseries output from FMRIVolume stage and onward now include "ses-" label

  • dcan_bold_processing updated from hotfix/issue27 branch to stable release v4.0.8; see changelist here: https://github.com/DCAN-Labs/dcan_bold_processing/releases

  • ExecutiveSummary updated from v0.0.1 to v2.2.10; see changelist here: https://github.com/DCAN-Labs/ExecutiveSummary/releases

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