playing with badge placements #75

	name: integration test
	on: push
	jobs:
	build:
	runs-on: ubuntu-20.04

	strategy:
	matrix:
	python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install openpyxl
	pip install flake8 wheel
	pip install .
	pip install coverage
	pip install coverage-badge
	- name: instalation test
	run: \|
	cd
	bidsme --help
	- name: lint with flake8
	run: \|
	flake8 .
	- name: unittests
	run: \|
	coverage run -m unittest
	coverage-badge -o actions/workflows/integration.yml/coverage
	- name: getting Test DS
	run: \|
	cd
	git clone https://github.com/CyclotronResearchCentre/bidsme_examples.git
	cd bidsme_examples/example1
	- name: preparation
	run: \|
	cd ~/bidsme_examples/example1
	bidsme prepare source/ renamed/ -r nii=MRI --part-template resources/participants.json --plugin resources/plugins/rename_plugin.py
	- name: mapping
	run: \|
	cd ~/bidsme_examples/example1
	bidsme map renamed/ bids/ --plugin resources/plugins/bidsify_plugin.py -b resources/map/bidsmap.yaml
	- name: process
	run: \|
	cd ~/bidsme_examples/example1
	bidsme process renamed/ bids/ --plugin resources/plugins/process_plugin.py -b resources/map/bidsmap.yaml
	- name: bidsfify
	run: \|
	cd ~/bidsme_examples/example1
	bidsme bidsify renamed/ bids/ --plugin resources/plugins/bidsify_plugin.py -b resources/map/bidsmap.yaml

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