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@ComparativeGenomicsToolkit

ComparativeGenomicsToolkit

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  1. Comparative-Annotation-Toolkit Comparative-Annotation-Toolkit Public

    Python 165 48

  2. cactus cactus Public

    Official home of genome aligner based upon notion of Cactus graphs

    C 505 111

  3. hal hal Public

    Hierarchical Alignment Format

    C++ 159 40

  4. hal2vg hal2vg Public

    Convert HAL to VG

    C++ 21 2

  5. taffy taffy Public

    This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files

    C 23 3

  6. paffy paffy Public

    Small C/CLI library of pairwise alignment format (paf) format tools used by Cactus

    C 6 2

Repositories

Showing 10 of 32 repositories
  • cactus Public

    Official home of genome aligner based upon notion of Cactus graphs

    ComparativeGenomicsToolkit/cactus’s past year of commit activity
    C 505 111 441 5 Updated Sep 27, 2024
  • cactus-gfa-tools Public
    ComparativeGenomicsToolkit/cactus-gfa-tools’s past year of commit activity
    C++ 1 MIT 0 1 0 Updated Aug 30, 2024
  • hal Public

    Hierarchical Alignment Format

    ComparativeGenomicsToolkit/hal’s past year of commit activity
    C++ 159 40 103 1 Updated Aug 24, 2024
  • hal2vg Public

    Convert HAL to VG

    ComparativeGenomicsToolkit/hal2vg’s past year of commit activity
    C++ 21 MIT 2 6 0 Updated Aug 12, 2024
  • cactus2hal Public
    ComparativeGenomicsToolkit/cactus2hal’s past year of commit activity
    C++ 0 1 0 0 Updated Jul 17, 2024
  • taffy Public

    This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files

    ComparativeGenomicsToolkit/taffy’s past year of commit activity
    C 23 MIT 3 8 2 Updated Jul 17, 2024
  • RetroFinder Public

    Tool for finding retroposed genes in genomes

    ComparativeGenomicsToolkit/RetroFinder’s past year of commit activity
    C 1 MIT 0 0 0 Updated Apr 6, 2024
  • Comparative-Annotation-Toolkit Public
    ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit’s past year of commit activity
    Python 165 Apache-2.0 48 108 4 Updated Mar 27, 2024
  • paffy Public

    Small C/CLI library of pairwise alignment format (paf) format tools used by Cactus

    ComparativeGenomicsToolkit/paffy’s past year of commit activity
    C 6 2 1 0 Updated Nov 9, 2023
  • mafTools Public Forked from dentearl/mafTools

    Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.

    ComparativeGenomicsToolkit/mafTools’s past year of commit activity
    C 9 32 0 0 Updated Oct 25, 2023
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