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CogStack

CogStack and related projects

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  1. CogStack-NiFi CogStack-NiFi Public

    Building data processing pipelines for documents processing with NLP using Apache NiFi and related services

    Python 43 20

  2. MedCAT MedCAT Public

    Medical Concept Annotation Tool

    Python 461 105

  3. MedCATtrainer MedCATtrainer Public

    A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.

    Python 75 34

  4. Foresight Foresight Public

    Deep Generative Modelling of Patient Timelines using Electronic Health Records

    Jupyter Notebook 54 8

  5. OpenGPT OpenGPT Public

    A framework for creating grounded instruction based datasets and training conversational domain expert Large Language Models (LLMs).

    Jupyter Notebook 344 43

Repositories

Showing 10 of 30 repositories
  • MedCAT Public

    Medical Concept Annotation Tool

    CogStack/MedCAT’s past year of commit activity
    Python 461 105 4 2 Updated Dec 24, 2024
  • CogStack-ModelServe Public

    A model serving and governance system for CogStack NLP solutions

    CogStack/CogStack-ModelServe’s past year of commit activity
    Python 0 1 0 3 Updated Dec 23, 2024
  • CogStack-NiFi Public

    Building data processing pipelines for documents processing with NLP using Apache NiFi and related services

    CogStack/CogStack-NiFi’s past year of commit activity
    Python 43 20 0 0 Updated Dec 19, 2024
  • cogstack-jupyter-hub Public

    Custom Jupyter Hub Docker image with example notebooks

    CogStack/cogstack-jupyter-hub’s past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Dec 18, 2024
  • MedCATtrainer Public

    A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.

    CogStack/MedCATtrainer’s past year of commit activity
    Python 75 34 16 1 Updated Dec 17, 2024
  • MedCATtutorials Public

    General tutorials for the setup and use of MedCAT.

    CogStack/MedCATtutorials’s past year of commit activity
    HTML 33 MIT 15 2 2 Updated Dec 17, 2024
  • working_with_cogstack Public

    Basic setup and easy to follow templates to interact and search CogStack for data analysts

    CogStack/working_with_cogstack’s past year of commit activity
    Jupyter Notebook 10 Apache-2.0 7 0 0 Updated Oct 8, 2024
  • MedCATservice Public

    Running MedCAT as a RESTful web service

    CogStack/MedCATservice’s past year of commit activity
    Python 18 14 0 0 Updated Oct 7, 2024
  • MedCATdemowebapp Public

    Demo web app for MedCAT

    CogStack/MedCATdemowebapp’s past year of commit activity
    Python 0 0 0 0 Updated May 22, 2024
  • AnonCATDemo Public Forked from antsh3k/deidentify

    The Deidentify app uses MedCAT to automatically redact or replace sensitive information in documents. Customisable rules and batch processing make it easy to handle large datasets.

    CogStack/AnonCATDemo’s past year of commit activity
    Vue 2 Apache-2.0 2 0 0 Updated Apr 12, 2024