Feature/update upstream #38
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Previous value -9999 did not have enough digits since new etopo 2022 data has this as an actual topography value in the Mariana Trench (when written with `Z_format='%.0f'`).
change nodata_value to -99999 in topotools.py
Fix bug related to tracking pressure at gauges
These do not need to be passed into update, unpacked, and repacked, since the objects created in the script will be used into update. If blit==False then they are not needed at all.
…rees with specified figure size
The default is now '%.3f', millimeter resolution, making smaller dtopo files than previously.
Improve chile2010_fgmax-fgout example script for fgout animation
Add dZ_format parameter to DTopography.write function
…iemann/src Note that rpn2_geoclaw.f and geoclaw_riemann_utils.f were update in riemann/src to handle 5 waves and rpt2_geoclaw_sym.f was discarded in favor of standard rpt2.f, which works fine with 5 waves.
Do not want to touch the old topotools file for reference.
Includes a couple of minor bugs related to gauge plotting. Major change involves how we now plot the gauge data.
If fewer than 5 digits, still add zero padding e.g. gauge00012.txt but no longer throws an error for large gauge numbers, e.g. gauge1234567.txt
Gauge filenames
Fix up gauge plotting for storm surge
Update Makefile.bouss to point to riemann/src for Riemann solvers
and support in fgout_tools.py for new dclaw attribute dclaw to set in setrun.py to indicate D-Claw, in which case 7 components of q are output instead of 4. Support for eventually indicating fewer components to output.
These mostly pertained to the CLE code.
Improve storm IO
improvements to fgout_module for t arrays and D-Claw
Now that `output_style==2` is supported for fgout grids (an array of times, see clawpack#617), the function fgout_tools.FGoutGrid.read_fgout_grids_data needs to be fixed to properly read in the new format of `fgout_grids.data`, also note that `nout` now comes before `tstart` and `tend` for `output_style==1`.
fix fgout_tools.FGoutGrid.read_fgout_grids_data for time array
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pull in upstream updates