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21 Open 11 Closed
21 Open 11 Closed
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Issues list

Issues about FAST-iCLIP pipeline
#35 opened Dec 24, 2024 by Zzy190516
Can't run example data - error "re-reun with the -g option for a genome file"
#33 opened Jun 20, 2018 by natsampaio
1
Can't run the example.
#32 opened Nov 19, 2017 by AmirArgoetti
1
FAST-iCLIP/docs/GRCm38/exons.bed has the same start and end coordinate
#31 opened Jul 13, 2017 by Shirleyyyyyy
Not able to run example
#30 opened Jul 4, 2017 by marencc
3
Support cases when there are 0 retroviral reads
#27 opened Jun 23, 2017 by bdo311
Bowtie prints out results as "error"
#26 opened Jun 23, 2017 by bdo311
problem in provided annotations
#25 opened Jun 22, 2017 by andypohl
expected output for example?
#24 opened Jun 22, 2017 by andypohl
6
fails with samtools >1.3
#20 opened May 1, 2016 by dy7t
1
retroviralMapping.py must be exectuded in FAST-iCLIP directory
#19 opened Apr 4, 2016 by EricDeveaud
motifAnalysis.py can't find docs if executed outside of FAST-iCLIP directory
#18 opened Apr 4, 2016 by EricDeveaud
ViralGenome_analysis.py can't find docs if executed outside of FAST-iCLIP directory
#17 opened Apr 4, 2016 by EricDeveaud
missing harcoded docs/mm9/mm9_ensembl_genes_BED6.bed
#16 opened Apr 4, 2016 by EricDeveaud
exit with value != 0 if err
#15 opened Apr 4, 2016 by EricDeveaud
installer does not install programs in bin
#14 opened Mar 31, 2016 by EricDeveaud
install doc does not talk about FASTICLIP_PATH
#13 opened Mar 31, 2016 by EricDeveaud
make perl configurable
#12 opened Mar 31, 2016 by EricDeveaud
dos2unix :: dependency not documented
#11 opened Mar 31, 2016 by EricDeveaud
matplotlib-venn needs to be included in setuptools
#8 opened Jan 29, 2016 by bdo311
Move all params to cfg.py
#5 opened Jan 29, 2016 by bdo311
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