Build and Push Singularity Image #41
Workflow file for this run
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| name: Build and Push Singularity Image | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: [ main ] | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: X86 | |
| defaults: | |
| run: | |
| shell: bash | |
| working-directory: ./singularity | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v2 | |
| - name: Build Singularity Image | |
| run: | | |
| sudo singularity build ciroh-ngen-singularity.sif singularity_ngen.def | |
| - name: Test | |
| run: | | |
| rm -rf /home/ubuntu/workspace/AWI_16_2853886_006/partitions*.json | |
| rm -rf /home/ubuntu/workspace/AWI_16_2853886_006/*.csv | |
| rm -rf /home/ubuntu/workspace/AWI_16_2853886_006/*.parquet | |
| rm -rf /home/ubuntu/workspace/AWI_16_2853886_006/outputs/*/* | |
| singularity run --bind /home/ubuntu/workspace/AWI_16_2853886_006:/ngen/ngen/data ciroh-ngen-singularity.sif "/ngen/ngen/data auto 2" | |
| output_count=`ls /home/ubuntu/workspace/AWI_16_2853886_006/outputs/* | wc -l` | |
| if [[ "$output_count" < 1 ]]; then | |
| echo "No outputs found" | |
| exit 1 | |
| else | |
| echo "Test run successfully" | |
| fi | |
| - name: Push Singularity Image to Library | |
| run: | | |
| singularity push -U ciroh-ngen-singularity.sif library://awiciroh/ngiab/ciroh-ngen-singularity:latest |