HFP (Human Foods Program)
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snp-pipeline
snp-pipeline PublicSNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organisms sequenced from samples of interest to food safety.
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bettercallsal
bettercallsal PublicNextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.
Repositories
- strainfish Public
strainfish is a weighted ensemble machine learning algorithm with multiple DNA sequence encoders and logic, specifically designed for classification of marker sequences.
CFSAN-Biostatistics/strainfish’s past year of commit activity - One_Health_Enteric_Package Public
One Health-compatible metadata package for genomic surveillance of enteric microbes
CFSAN-Biostatistics/One_Health_Enteric_Package’s past year of commit activity - refchooser-galaxy Public
CFSAN-Biostatistics/refchooser-galaxy’s past year of commit activity - data-commons Public
CFSAN-Biostatistics/data-commons’s past year of commit activity - bettercallsal Public
Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.
CFSAN-Biostatistics/bettercallsal’s past year of commit activity - bioconda-recipes Public Forked from bioconda/bioconda-recipes
Conda recipes for the bioconda channel.
CFSAN-Biostatistics/bioconda-recipes’s past year of commit activity
