Separate github workflows by container #2
Workflow file for this run
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| name: Test fhir-converter Container | |
| on: | |
| workflow_call: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: | |
| - "**" | |
| merge_group: | |
| types: | |
| - checks_requested | |
| push: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - pyproject.toml | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| TEST_RUNNER_PYTHON_VERSION: 3.10.12 | |
| CONTAINER: fhir-converter | |
| jobs: | |
| unit-test-python-containers: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup python ${{env.TEST_RUNNER_PYTHON_VERSION}} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{env.TEST_RUNNER_PYTHON_VERSION}} | |
| cache: pip | |
| - name: Install pytest | |
| run: pip install pytest | |
| - name: Install dependencies | |
| working-directory: ./containers/${{env.CONTAINER}} | |
| run: | | |
| commit_hash=$(git rev-parse HEAD) | |
| find ./ -name requirements.txt -exec sed -i -e "s/phdi@main/phdi@${commit_hash}/g" {} \; | |
| pip install -r requirements.txt | |
| if [ -f dev-requirements.txt ]; then | |
| pip install -r dev-requirements.txt | |
| fi | |
| - name: Run unit tests for container | |
| working-directory: ./containers/${{env.CONTAINER}} | |
| run: | | |
| python -m pytest -m "not integration" | |
| integration-test-python-containers: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| steps: | |
| - name: Check if working directory exists | |
| id: check_dir | |
| run: | | |
| if [ -d "./containers/${{env.CONTAINER}}/tests/integration" ]; then | |
| echo "exists=true" >> $GITHUB_ENV | |
| else | |
| echo "exists=false" >> $GITHUB_ENV | |
| fi | |
| - name: Checkout | |
| if: env.exists == 'true' | |
| uses: actions/checkout@v4 | |
| - name: Setup python ${{env.TEST_RUNNER_PYTHON_VERSION}} | |
| if: env.exists == 'true' | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{env.TEST_RUNNER_PYTHON_VERSION}} | |
| cache: pip | |
| - name: Install pytest | |
| if: env.exists == 'true' | |
| run: pip install pytest | |
| - name: Install dependencies | |
| if: env.exists == 'true' | |
| working-directory: ./containers/${{env.CONTAINER}} | |
| # When running as a PR check, instead of importing the SDK from @main, | |
| # import it from the current commit. (Need to do this for all containers) | |
| run: | | |
| if [[ $GITHUB_REF != "refs/heads/main" ]]; then | |
| commit_hash=$(git rev-parse HEAD) | |
| find ./ -name requirements.txt -exec sed -i -e "s/phdi@main/phdi@${commit_hash}/g" {} \; | |
| fi | |
| pip install -r requirements.txt | |
| if [ -f dev-requirements.txt ]; then | |
| pip install -r dev-requirements.txt | |
| fi | |
| - name: Run integration tests for containers | |
| if: env.exists == 'true' | |
| working-directory: ./containers/${{env.CONTAINER}}/tests/integration | |
| run: | | |
| python -m pytest -m "integration" | |
| unit-test-dotnet-fhir-converter: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Setup dotnet | |
| uses: actions/setup-dotnet@v3 | |
| with: | |
| dotnet-version: "8.0.x" | |
| - name: Run tests | |
| working-directory: ./containers/${{env.CONTAINER}} | |
| run: dotnet test |