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fix: spelling of SIFs dir (#182)
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* fix: lowercase SIFs dir

see #181

* chore: update CHANGELOG.md
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kelly-sovacool authored Dec 2, 2024
1 parent ee1a9e4 commit 6af726a
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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@@ -1,5 +1,7 @@
## RENEE development version

- Fix spelling of shared SIF directory on biowulf -- it is `/data/CCBR_Pipeliner/SIFs` with a lowercase "s" at the end. (#182, @kelly-sovacool)

## RENEE 2.6.3

- Upgrade containers to fix $PYTHONPATH clashes in `fc_lane`, `inner_distance`, `tin`, `tin_merge`, and `rnaseq_multiqc`. (#176, @kelly-sovacool)
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -123,7 +123,7 @@ renee run \
--output /data/$USER/RNA_hg38 \
--genome hg38_36 \
--mode slurm \
--sif-cache /data/CCBR_Pipeliner/SIFS
--sif-cache /data/CCBR_Pipeliner/SIFs
```

#### 3.2 FRCE
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2 changes: 1 addition & 1 deletion tests/test_cache.py
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Expand Up @@ -47,7 +47,7 @@ def test_cache_nosif():

def test_get_sif_cache_dir():
assertions = [
"'CCBR_Pipeliner/SIFS' in get_sif_cache_dir('biowulf')",
"'CCBR_Pipeliner/SIFs' in get_sif_cache_dir('biowulf')",
"'CCBR-Pipelines/SIFs' in get_sif_cache_dir('frce')",
]
errors = [assertion for assertion in assertions if not eval(assertion)]
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