rename re to regex to avoid shadowing

BojarLab · Jan 21, 2024 · 10b6b40 · 10b6b40
1 parent 2c6d3f8
commit 10b6b40
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Showing 8 changed files with 3,476 additions and 3,448 deletions.
diff --git a/03_motif.ipynb b/03_motif.ipynb
diff --git a/build/lib/glycowork/motif/annotate.py b/build/lib/glycowork/motif/annotate.py
@@ -6,7 +6,7 @@
 from glycowork.glycan_data.loader import lib, linkages, motif_list, find_nth, unwrap, replace_every_second, remove_unmatched_brackets
 from glycowork.motif.graph import subgraph_isomorphism, generate_graph_features, glycan_to_nxGraph, graph_to_string, ensure_graph
 from glycowork.motif.processing import IUPAC_to_SMILES, get_lib, find_isomorphs, expand_lib, rescue_glycans
-from glycowork.motif.re import get_match
+from glycowork.motif.regex import get_match
 
 
 def link_find(glycan):

diff --git a/build/lib/glycowork/motif/draw.py b/build/lib/glycowork/motif/draw.py
@@ -1,5 +1,5 @@
 from glycowork.glycan_data.loader import lib, unwrap, motif_list, multireplace
-from glycowork.motif.re import get_match
+from glycowork.motif.regex import get_match
 from glycowork.motif.graph import glycan_to_nxGraph, categorical_node_match_wildcard
 from glycowork.motif.tokenization import get_core, get_modification
 from glycowork.motif.processing import expand_lib, min_process_glycans, get_possible_linkages, get_possible_monosaccharides, rescue_glycans

diff --git a/glycowork.egg-info/SOURCES.txt b/glycowork.egg-info/SOURCES.txt
@@ -46,7 +46,7 @@ glycowork/motif/graph.py
 glycowork/motif/mz_to_composition.csv
 glycowork/motif/processing.py
 glycowork/motif/query.py
-glycowork/motif/re.py
+glycowork/motif/regex.py
 glycowork/motif/tokenization.py
 glycowork/network/__init__.py
 glycowork/network/biosynthesis.py

diff --git a/glycowork/_modidx.py b/glycowork/_modidx.py
@@ -23,7 +23,7 @@
             'glycowork.motif.graph': {},
             'glycowork.motif.processing': {},
             'glycowork.motif.query': {},
-            'glycowork.motif.re': {},
+            'glycowork.motif.regex': {},
             'glycowork.motif.tokenization': {},
             'glycowork.network': {},
             'glycowork.network.biosynthesis': {},

diff --git a/glycowork/motif/annotate.py b/glycowork/motif/annotate.py
@@ -6,7 +6,7 @@
 from glycowork.glycan_data.loader import lib, linkages, motif_list, find_nth, unwrap, replace_every_second, remove_unmatched_brackets
 from glycowork.motif.graph import subgraph_isomorphism, generate_graph_features, glycan_to_nxGraph, graph_to_string, ensure_graph
 from glycowork.motif.processing import IUPAC_to_SMILES, get_lib, find_isomorphs, expand_lib, rescue_glycans
-from glycowork.motif.re import get_match
+from glycowork.motif.regex import get_match
 
 
 def link_find(glycan):

diff --git a/glycowork/motif/draw.py b/glycowork/motif/draw.py
@@ -1,5 +1,5 @@
 from glycowork.glycan_data.loader import lib, unwrap, motif_list, multireplace
-from glycowork.motif.re import get_match
+from glycowork.motif.regex import get_match
 from glycowork.motif.graph import glycan_to_nxGraph, categorical_node_match_wildcard
 from glycowork.motif.tokenization import get_core, get_modification
 from glycowork.motif.processing import expand_lib, min_process_glycans, get_possible_linkages, get_possible_monosaccharides, rescue_glycans

diff --git a/glycowork/motif/re.py → glycowork/motif/regex.py b/glycowork/motif/re.py → glycowork/motif/regex.py