Revert changes and add test #119
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: build-checks-release | |
| on: | |
| push: | |
| branches: [ devel ] | |
| pull_request: | |
| branches: [ devel ] | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ubuntu-latest | |
| container: rocker/r-ver:4.2 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| shell: Rscript {0} | |
| - name: Install system requirements | |
| run: | | |
| apt-get update | |
| apt-get install -y --no-install-recommends apt-utils | |
| apt-get install -y --no-install-recommends zlib1g-dev libfftw3-dev libxml2-dev libxt-dev curl pandoc-citeproc libproj-dev libgdal-dev pandoc libmagick++-dev bzip2 | |
| apt-get clean | |
| rm -rf /var/lib/apt/ilists/* | |
| - name: Install dependencies | |
| run: | | |
| install.packages("BiocManager") | |
| remotes::install_deps(dependencies = TRUE, repos = BiocManager::repositories(), Ncpu = 2L) | |
| BiocManager::install("matrixStats", force = TRUE) | |
| shell: Rscript {0} | |
| - name: Find PhantomJS path | |
| id: phantomjs | |
| run: | | |
| echo "::set-output name=path::$(Rscript -e 'cat(shinytest:::phantom_paths()[[1]])')" | |
| - name: Cache PhantomJS | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ steps.phantomjs.outputs.path }} | |
| key: ${{ matrix.config.os }}-phantomjs | |
| restore-keys: ${{ matrix.config.os }}-phantomjs | |
| - name: Install PhantomJS | |
| run: > | |
| Rscript | |
| -e "if (!shinytest::dependenciesInstalled()) shinytest::installDependencies()" | |
| - name: Check | |
| run: | | |
| install.packages("rcmdcheck") | |
| rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error") | |
| shell: Rscript {0} | |
| - name: BiocCheck | |
| run: | | |
| BiocManager::install("BiocCheck") | |
| BiocCheck::BiocCheck(".") | |
| shell: Rscript {0} | |
| - name: Test coverage | |
| run: | | |
| remotes::install_cran(c("covr")) | |
| covr::codecov(token = "${{secrets.CODECOV_TOKEN}}") | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} |