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Chore: Update copyright dates
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adrien-berchet committed May 15, 2024
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Showing 77 changed files with 77 additions and 77 deletions.
2 changes: 1 addition & 1 deletion examples/extract_synthesis_inputs.py
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# noqa

# Copyright (C) 2022 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion examples/synthesize_neuron_external_diameter.py
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# noqa

# Copyright (C) 2022 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion examples/synthesize_neuron_with_diameters.py
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# noqa

# Copyright (C) 2022 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion examples/synthesize_neurons.py
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# noqa

# Copyright (C) 2022 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion examples/synthesize_single_neuron.py
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# noqa

# Copyright (C) 2022 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/__init__.py
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Synthesis of artificial neurons using their topological profiles package.
"""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/astrocyte/__init__.py
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"""Module to generate astrocyte morphologies."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0
2 changes: 1 addition & 1 deletion neurots/astrocyte/context.py
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"""Space colonization context data structures."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/astrocyte/grower.py
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"""NeuroTS class: Grower object that contains the grower functionality."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/astrocyte/point_cloud.py
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"""Point cloud class for synapses."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/astrocyte/section.py
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"""Astrocyte section growers."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/astrocyte/space_colonization.py
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"""Basic class for TreeGrower Algorithms for space colonization."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/astrocyte/tmd_utils.py
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"""Barcode utils."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/astrocyte/tree.py
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"""NeuroTS class: Tree."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/basic.py
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"""A file to store general basic functionality needed in different modules."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/extract_input/__init__.py
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"""Module to extract morphometrics and TMD-input from a set of tree-shaped cells."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/extract_input/from_TMD.py
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"""Extracts the distributions associated with TMD module."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/extract_input/from_diameter.py
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"""Module to extract morphometrics about diameters of cells."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/extract_input/from_neurom.py
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"""Extracts the distributions associated with NeuroM module."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/extract_input/input_distributions.py
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"""Input distributions."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/extract_input/input_parameters.py
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"""Input parameters functions."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/generate/__init__.py
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"""The module used to generate the morphologies."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0
2 changes: 1 addition & 1 deletion neurots/generate/algorithms/__init__.py
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"""Tools used in morphology generation."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0
2 changes: 1 addition & 1 deletion neurots/generate/algorithms/abstractgrower.py
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"""Abstract class for TreeGrower Algorithms."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/generate/algorithms/barcode.py
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"""Class to collect all TMD related info used in NeuroTS."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/generate/algorithms/basicgrower.py
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"""Basic class for TreeGrower Algorithms."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/generate/algorithms/common.py
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"""Functionality used by multiple algorithms."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/generate/algorithms/tmdgrower.py
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"""Basic class for TreeGrower Algorithms."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/generate/diametrizer.py
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"""Models to create diameters of synthesized cells."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/generate/grower.py
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"""NeuroTS class: Grower object that contains the grower functionality."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion neurots/generate/orientations.py
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"""Module for handling the calculation of neurite orientations."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/generate/section.py
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"""NeuroTS class: Section grower."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/generate/soma.py
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"""NeuroTS class: Soma."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/generate/tree.py
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"""NeuroTS class: Tree."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/morphmath/__init__.py
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"""Mathematical tools for morphologies."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0
2 changes: 1 addition & 1 deletion neurots/morphmath/bifurcation.py
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"""Definition of bifurcation functionality."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/morphmath/point_array.py
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"""Point array class."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/morphmath/rotation.py
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"""Definition of basic rotation functionality."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/morphmath/sample.py
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"""Definition of distributions to sample from."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/morphmath/utils.py
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"""Util functions useful for general purposes."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/preprocess/__init__.py
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"""Functions used for preprocessing."""

# Copyright (C) 2022 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/preprocess/exceptions.py
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"""Exceptions raised during validation process."""

# Copyright (C) 2022 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/preprocess/preprocessors.py
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`@register_global_processor` if they need the entire data.
"""

# Copyright (C) 2022 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/preprocess/relevance_checkers.py
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These functions can be called either in validity checkers or inside the grower codes.
"""

# Copyright (C) 2022 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/preprocess/utils.py
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"""Some utils for preprocessing."""

# Copyright (C) 2022 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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2 changes: 1 addition & 1 deletion neurots/preprocess/validity_checkers.py
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`@register_global_validator` if they need the entire data.
"""

# Copyright (C) 2022 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/utils.py
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"""NeuroTS utils used by multiple tools."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion neurots/validator.py
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Visit https://json-schema.org/understanding-json-schema/ for more information about JSON schemas.
"""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion setup.py
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"""Setup for the NeuroTS package."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0

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2 changes: 1 addition & 1 deletion tests/__init__.py
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"""Tests suite for the NeuroTS package."""

# Copyright (C) 2021 Blue Brain Project, EPFL
# Copyright (C) 2021-2024 Blue Brain Project, EPFL
#
# SPDX-License-Identifier: Apache-2.0
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