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Add alternative apical point definition
* Modifies apical point distance to smoothed version * Adds parameter 'has_apical_tuft' for apical trees * Replaces definition of apical point for untufted cells * If 'has_apical_tuft' is False, the 70% of total lenght is defined as apical point distance Change-Id: Idb3c8e41c080235b963c435b9a6dc7c3d4449401
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tests/data/expected_bio_rat_L5_TPC_B_with_params4_persistence_diagram.json
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{"apical": {"branching_method": "directional", | ||
"growth_method": "tmd_apical", | ||
"has_apical_tuft": false, | ||
"metric": "path_distances", | ||
"modify": null, | ||
"orientation": [[0.0, | ||
1.0, | ||
0.0]], | ||
"radius": 0.3, | ||
"randomness": 0.15, | ||
"targeting": 0.12, | ||
"tree_type": 4, | ||
"step_size": {"norm":{"mean":1.0, "std":0.2}}}, | ||
"axon": {}, | ||
"basal": {"branching_method": "bio_oriented", | ||
"growth_method": "tmd", | ||
"metric": "path_distances", | ||
"modify": null, | ||
"orientation": null, | ||
"radius": 0.3, | ||
"randomness": 0.15, | ||
"targeting": 0.12, | ||
"tree_type": 3, | ||
"step_size": {"norm":{"mean":1.0, "std":0.2}}}, | ||
"grow_types": ["basal", "apical"], | ||
"origin": [0.0, | ||
0.0, | ||
0.0], | ||
"diameter_params": {"method": "default"}} |
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