Add examples and test data

BlueBrain · Feb 8, 2018 · 4c13ca0 · 4c13ca0
1 parent 169d002
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diff --git a/examples/fix_diameters.py b/examples/fix_diameters.py
@@ -0,0 +1,10 @@
+import tns
+
+# Cell to use as input for the diameter model
+input_cell = '../../bitbucket/MorphSynthesis/Input/L5SPC_Input/GoodRepaired/Fluo55_low.h5'
+synthesized_cell = './local/Neuron.h5'
+output_cell = './local/Neuron_diam'
+
+tns.diametrize(input_file=input_cell,
+               cell_name=synthesized_cell,
+               new_name=output_cell)
diff --git a/examples/generate_cell.py b/examples/generate_cell.py
@@ -1,4 +1,6 @@
+import tns
 from tns import extract_input
+from tns.grower import neuron
 
 # Extract distributions from cells in input directory
 filename = '../Input/L5SPC_Input/GoodRepaired/'

diff --git a/test_data/valid/C010398B-P2.CNG.swc → test_data/bio/C010398B-P2.CNG.swc b/test_data/valid/C010398B-P2.CNG.swc → test_data/bio/C010398B-P2.CNG.swc