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v0.0.4 #40

Merged
merged 19 commits into from
Jul 31, 2024
Merged

v0.0.4 #40

merged 19 commits into from
Jul 31, 2024

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spriyansh
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@spriyansh spriyansh commented Jul 30, 2024 •
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scMaSigPro 0.0.4 (2024-07-30)

  • Dependency Changes

    • Removed hard dependency on RColorConesa and ComplexUpset.
    • Removed assertthat, stringr from namespace.
    • Removed maSigPro::position from namespace.

  • Plotting Updates

    • Updated plot functions to use a custom palette.
    • Updated plotTrendCluster function for distinct layers.
    • Enhanced plotIntersect() with return capabilities.
    • Enhanced plotTrend with curves, lines, and points.
    • Updated ordering by frequency in UpsetR.

  • Function Updates

    • Added clean_string() internal function.
    • Added sc.restruct() function.
    • Exported pb_helpers().

  • Documentation Updates

    • General code styling.
    • Updated README with citation information.
    • Single comprehensive data documentation.
    • Added a new vignette.

  • Bug Fixes

    • Removed patchwork call.

Addressing #39

spriyansh and others added 19 commits July 24, 2024 14:33
@spriyansh
- Update docs
1488efe 
- Update version desc
- Export pb_helpers()
- Update Readme with cite
- Remove patchwork call
@spriyansh
Remove 'assert_that()' from session import
6496dec
@spriyansh
- Remove individual data docs
aba86cc 
- Create single data doc
@spriyansh
- Remove assertthat from namespace
3ac1d92 
- Add mulilineage example data
@spriyansh
Add restructring function for bins
c1ee45a
@spriyansh
- Add clean_string internal fn
0d92a8c 
- Remove maSigPro from namespace
- General styling
- Add string clean to step fn
- Add new vignette
@spriyansh
Remove 'ComplexUpset' dependency.
00d4017
@spriyansh
- Update ordering by freq in UpsetR
e92d7ed 
- BugFix keep empty group paramter
@spriyansh
- Update plotIntersect() with return.
febb528 
- Update plotTrend with curves, lines, points
@spriyansh
Update sc.restruct param for 'link'
c416f86 
Add control for geom line, curve and pt in plotting fn
@spriyansh
- Update plotTrendCluster fn for distinct layers
78a6a49 
- Update basic vignette plotting
@spriyansh
Remove stringr namespace import
25e0fd3
@spriyansh
- Remove dependency from RcolorConesa
b1650f8 
- Update plot functions with custom pallete
- New custom color fn
@spriyansh
- Update vignette titles
4eacbda 
- Add suppress warnings
- Beta release v0.0.4
@spriyansh
Remove colname operation on monocel3 CDS
87907c0
@spriyansh
Fix rownames operation for monocle3
2a6e83b
@spriyansh
- Update installation steps
ebd710d 
- State explicit dependencies
@spriyansh
Add parameter loess-span
635b497
@spriyansh
Merge pull request #2 from spriyansh/multi_lineage
adbf93c 
v0.04
@spriyansh spriyansh added this to the v0.0.4 milestone Jul 30, 2024
@spriyansh spriyansh requested a review from MartaBenegas July 30, 2024 13:50
@spriyansh spriyansh merged commit e9d4ce3 into BioBam:main Jul 31, 2024
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@MartaBenegas MartaBenegas MartaBenegas approved these changes

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@spriyansh @MartaBenegas