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Add library kit#332

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OPSergio wants to merge 25 commits intoBU-ISCIII:mainBU-ISCIII/relecov-tools:mainfrom OPSergio:add-library-kitOPSergio/relecov-tools:add-library-kitCopy head branch name to clipboard

+333-152

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Commits on Oct 25, 2024

• Logs-to-excel accepts multiple keys and includes folder logs

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  72cf054

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• Logs-to-excel accepts multiple keys and includes folder logs. Linting

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  ef7b207

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• Updated CHANGELOG.md

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Commits on Oct 29, 2024

• Better logging messages for duplicate sampleids

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• Now can provide samples files path when no samples_data is provided.

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• Included files-folder option for read-lab-metadata

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• Better logging. Stop if no samples files found

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• Better logging messages for duplicate sampleids. Linting

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• Included files-folder arg for read-lab-metadata.linting

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• Included files-folder arg for read-lab-metadata.linting2

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• Updated CHANGELOG.md

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• Changed sample_id verification order

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Commits on Nov 4, 2024

• Included new folder_names argument to specify folders

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• Included a string_to_date() to extract date from a string

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• Included datetime module import

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• Small logging improvements

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• Better handling of missing config params

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• Included group_by_fields list in pipeline_manager prop

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• fixed docstring in split_data_by_key()

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• Now split by the given fields in config and process list of input folders if given

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• Now string_to_date() searches iteratively

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• new argument folder_names. Linting

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• Now string_to_date() searches iteratively. Added _

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  71bac10

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• Updated CHANGELOG.md

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Commits on Nov 5, 2024

• Add SQK-RBK114-96 to library_preparation_kit schema

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