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New wrapper module & changes in logs reporting #322
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Shettland
changed the title
TEMPORAL TITLE: WRAPPER PR
New wrapper module & changes in logs reporting
Oct 8, 2024
luissian
approved these changes
Oct 8, 2024
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This PR includes a new module temporarily called "wrapper" which executes download, read-lab-metadata and validate processes consecutively for each downloaded set of samples. This simplifies the processing workflow as all the provided metadata is validated and a report is generated including all the errors found for each sample which can be sent via email to the corresponding submitter.
Along with this new module come several changes in related modules:
logs-to-excel
now has a cell size adjustment step for large messagesCloses #302