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Fixes and improvements in launch_pipeline #303

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merged 11 commits into from
Sep 5, 2024
Merged

Fixes and improvements in launch_pipeline #303

merged 11 commits into from
Sep 5, 2024

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saramonzon
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  • Path fixing for R2 copy
  • Some variable renaming
  • Check for possible duplicate samples
  • Now sample renaming to sequencing_sample_id is done already in RAW
  • Creation of samples_id.txt for seamless use with lablogs

Shettland
Shettland approved these changes Sep 5, 2024
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LGTM!

@saramonzon saramonzon merged commit 84553c0 into BU-ISCIII:develop Sep 5, 2024
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@Shettland Shettland Shettland approved these changes

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@saramonzon @Shettland