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Changed swabbing for swab. small fix #24

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Changed swabbing for swab. small fix

Changed swabbing for swab. small fix #24

Triggered via push May 20, 2024 08:24
@ShettlandShettland
pushed a283e35
develop
Status Failure
Total duration 10m 8s
Artifacts –

test_modules.yml

on: push
security_check
2s
security_check
Matrix: test_all_modules
Matrix: test_map
Matrix: test_sftp_handle
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4 errors and 12 warnings
test_all_modules (read-lab-metadata)
Process completed with exit code 1.
test_all_modules (read-bioinfo-metadata)
The job was canceled because "read-lab-metadata" failed.
test_all_modules (validate)
The job was canceled because "read-lab-metadata" failed.
test_sftp_handle (download_clean)
Process completed with exit code 1.
test_all_modules (read-lab-metadata)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v3, actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test_all_modules (read-bioinfo-metadata)
No files were found with the provided path: output.txt. No artifacts will be uploaded.
test_map (-d 'GISAID' -f relecov_tools/schema/gisaid_schema.json)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v3, actions/checkout@v3, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test_map (-d 'GISAID' -f relecov_tools/schema/gisaid_schema.json)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_map (-d 'GISAID' -f relecov_tools/schema/gisaid_schema.json)
No files were found with the provided path: output.txt. No artifacts will be uploaded.
test_map (-d 'ENA' -f relecov_tools/schema/ena_schema.json)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v3, actions/checkout@v3, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test_map (-d 'ENA' -f relecov_tools/schema/ena_schema.json)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test_map (-d 'ENA' -f relecov_tools/schema/ena_schema.json)
No files were found with the provided path: output.txt. No artifacts will be uploaded.
test_all_modules (validate)
No files were found with the provided path: output.txt. No artifacts will be uploaded.
test_sftp_handle (download_only)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v3, actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test_sftp_handle (download_only, -t COD-test-1)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v3, actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test_sftp_handle (download_clean)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v3, actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.