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Bugfixes and the return of Omnipose
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@lacan lacan released this 16 May 13:25
· 64 commits to main since this release
v0.7.0
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Learn about vigilant mode.

With the current versions of Cellpose and Omnipose, we have gotten them to play nice enough with each other and drafter this new release with a (small) breaking change.

Python Path is now the only available way of calling your cellpose or omnipose installation. You will need to update your Preferences under Cellpose/Omnipose

This follows with what was done for TrackMate, and simplifies our life so we can be conda/mamba/venv agnostic. This has been tested on Windows and Mac with no problems. We of course welcome feedback!

The documentation has been updated to reflect this change.

A small bug where preprocessing steps were not taken into account on training images was also fixed

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