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add snakemake resources + memory requirements per rule #97

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merged 2 commits into from
Jun 7, 2021

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@rekado rekado commented Jun 7, 2021

Let's rebase and merge this. It's perhaps a little crude, and having a fixed memory hint for each rule independent of file size may be a little inflexible, but this already helps a lot with execution on smaller systems.

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rekado commented Jun 7, 2021

Since trimming has changed it would be good to pick a memory limit for fastp.

@borauyar borauyar merged commit 3ac5261 into master Jun 7, 2021
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