Clean imports

[shawntanzk]

@patrick-lloyd-ray - I've moved this to merged imports
I've added a bunch of imports that you did not tick as it makes the ontology a bit cleaner to look at (esp if users entry to it is directly through protege)
Please do take a look at the -edit file for now, if you are ok I will make a release based on this.
If the ontology looks a bit difficult to navigate now, a possibility is for us to launch a customised OLS instance for this ontology in a AWS server or something - from there you can control what the root nodes are and hence what your users see.
For updating imports, you can add the terms (eg you want to add a OBI term) to obi_terms.txt as usually, but then running make imports/merged_imports.owl instead

Fixes #76

[shawntanzk]

error:

2022-02-24 08:49:35,072 ERROR org.obolibrary.robot.ReasonOperation - Equivalence: <http://purl.obolibrary.org/obo/UO_0010048> == <http://purl.obolibrary.org/obo/UO_0000039>
2022-02-24 08:49:35,072 ERROR org.obolibrary.robot.ReasonOperation - Equivalence: <http://purl.obolibrary.org/obo/UO_0000176> == <http://purl.obolibrary.org/obo/UO_0000273>

will remove them given UO isn't needed

[shawntanzk]

Current error with DL profile, all coming from this pattern:

Not enough operands; at least two needed: ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/OBI_0100051> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/OBI_0000312> <http://purl.obolibrary.org/obo/OBI_0600005>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0001000> <http://purl.obolibrary.org/obo/**TERM**>))) [EquivalentClasses(<http://purl.obolibrary.org/obo/**TERM**> ObjectIntersectionOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/OBI_0100051> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/OBI_0000312> <http://purl.obolibrary.org/obo/OBI_0600005>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0001000> <http://purl.obolibrary.org/obo/**TERM**>))) ) in OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/tmn.owl>) VersionIRI(<http://purl.obolibrary.org/obo/tmn/releases/2022-02-24/tmn.owl>))]`

[shawntanzk]

Probably this pattern

[shawntanzk]

see obi-ontology/obi#1500 (comment) for details

[shawntanzk]

disabled the check for now, will make a ticket to reinstate once we can figure it out with OBI :)

[shawntanzk]

ODK 1.3.0 seems to have some issue with DOSDP stuff, will revert for now

Issue was with QC using an old ODK - should be fixed now