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WRF update (to 4.1.5, previous version 4.1.3) #231

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merged 4 commits into from
Apr 21, 2020
Merged

WRF update (to 4.1.5, previous version 4.1.3) #231

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bee36e3
Update wrf version to 4.1.5 and changed openmpi version
garvct Apr 20, 2020
47c26b0
Updated wrf to 4.1.5 and added openmpi version variable
garvct Apr 20, 2020
8c6522d
Removed netcdf and added netcdf-c
garvct Apr 20, 2020
5666c8c
Updated openmpi pbs script.
garvct Apr 20, 2020
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10 changes: 5 additions & 5 deletions apps/wrf/install_wrf_omp_openmpi.sh
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Original file line number Diff line number Diff line change
@@ -1,12 +1,13 @@
#!/bin/bash

APP_NAME=wrf
APP_VERSION=4.1.3
APP_VERSION=4.1.5
SKU_TYPE=${SKU_TYPE:-hb}
SHARED_APP=${SHARED_APP:-/apps}
MODULE_DIR=${SHARED_APP}/modulefiles/${SKU_TYPE}/${APP_NAME}
MODULE_NAME=${APP_VERSION}-omp-openmpi
APP_DIR=$SHARED_APP/${SKU_TYPE}/${APP_NAME}-omp-openmpi
OPENMPI_VER=4.0.3
APPS_WRF_DIR=`pwd`

function create_modulefile {
Expand All @@ -24,7 +25,7 @@ EOF
sudo yum install -y jasper-devel
sudo yum install -y libpng-devel

spack install netcdf-fortran+mpi ^netcdf~parallel-netcdf ^hdf5+fortran %gcc@9.2.0 ^openmpi@4.0.2
spack install netcdf-fortran+mpi ^hdf5+fortran %gcc@9.2.0 ^openmpi@${OPENMPI_VER}
source ${SPACK_ROOT}/share/spack/setup-env.sh

mkdir -p ${APP_DIR}
Expand All @@ -33,16 +34,15 @@ wget https://github.com/wrf-model/WRF/archive/v${APP_VERSION}.tar.gz
tar xvf v${APP_VERSION}.tar.gz

spack load netcdf-fortran^openmpi
spack load netcdf^openmpi
spack load hdf5^openmpi
spack load perl
module load mpi/openmpi-4.0.2
module load mpi/openmpi-${OPENMPI_VER}
module load gcc-9.2.0

export HDF5=$(spack location -i hdf5^openmpi)
export NETCDF=$(spack location -i netcdf-fortran^openmpi)

NETCDF_C=$(spack location -i netcdf^openmpi)
NETCDF_C=$(spack location -i netcdf-c^openmpi)
ln -sf $NETCDF_C/include/* $NETCDF/include/
ln -sf $NETCDF_C/lib/* $NETCDF/lib/
ln -sf $NETCDF_C/lib/pkgconfig/* $NETCDF/lib/pkgconfig
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10 changes: 5 additions & 5 deletions apps/wrf/install_wrf_openmpi.sh
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Original file line number Diff line number Diff line change
@@ -1,12 +1,13 @@
#!/bin/bash

APP_NAME=wrf
APP_VERSION=4.1.3
APP_VERSION=4.1.5
SKU_TYPE=${SKU_TYPE:-hb}
SHARED_APP=${SHARED_APP:-/apps}
MODULE_DIR=${SHARED_APP}/modulefiles/${SKU_TYPE}/${APP_NAME}
MODULE_NAME=${APP_VERSION}-openmpi
APP_DIR=$SHARED_APP/${SKU_TYPE}/${APP_NAME}-openmpi
OPENMPI_VER=4.0.3
APPS_WRF_DIR=`pwd`

function create_modulefile {
Expand All @@ -24,7 +25,7 @@ EOF
sudo yum install -y jasper-devel
sudo yum install -y libpng-devel

spack install netcdf-fortran+mpi ^netcdf~parallel-netcdf ^hdf5+fortran %gcc@9.2.0 ^openmpi@4.0.2
spack install netcdf-fortran+mpi ^hdf5+fortran %gcc@9.2.0 ^openmpi@${OPENMPI_VER}
source ${SPACK_ROOT}/share/spack/setup-env.sh

mkdir -p ${APP_DIR}
Expand All @@ -33,16 +34,15 @@ wget https://github.com/wrf-model/WRF/archive/v${APP_VERSION}.tar.gz
tar xvf v${APP_VERSION}.tar.gz

spack load netcdf-fortran^openmpi
spack load netcdf^openmpi
spack load hdf5^openmpi
spack load perl
module load mpi/openmpi-4.0.2
module load mpi/openmpi-${OPENMPI_VER}
module load gcc-9.2.0

export HDF5=$(spack location -i hdf5^openmpi)
export NETCDF=$(spack location -i netcdf-fortran^openmpi)

NETCDF_C=$(spack location -i netcdf^openmpi)
NETCDF_C=$(spack location -i netcdf-c^openmpi)
ln -sf $NETCDF_C/include/* $NETCDF/include/
ln -sf $NETCDF_C/lib/* $NETCDF/lib/
ln -sf $NETCDF_C/lib/pkgconfig/* $NETCDF/lib/pkgconfig
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9 changes: 5 additions & 4 deletions apps/wrf/run_wrf_openmpi.pbs
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Original file line number Diff line number Diff line change
@@ -1,14 +1,15 @@
#!/bin/bash

export MODULEPATH=/apps/modulefiles/${SKU_TYPE}:$MODULEPATH
SHARED_APP=${SHARED_APP:-/apps}

export MODULEPATH=${SHARED_APP}/modulefiles/${SKU_TYPE}:$MODULEPATH

spack load netcdf-fortran^openmpi
spack load netcdf^openmpi
spack load hdf5^openmpi
spack load perl
module load mpi/openmpi-4.0.2
module load mpi/openmpi-4.0.3
module load gcc-9.2.0
module load wrf/4.1.3-openmpi
module load wrf/4.1.5-openmpi

which mpicc
which wrf.exe
Expand Down