Releases: Atkinson-Lab/Tractor
Releases · Atkinson-Lab/Tractor
Tractor v1.4.0
- Added support for compressed (gz) hapcount/dosage and phenotype files.
- Improved file reading efficiency by implementing fread in chunks, mitigating memory errors.
- Use
--chunksize
to define number of lines from the file read. Default: 10000
- Use
- Implemented parallel processing for regression, resulting in significant speed improvements with multi-core systems.
- Use
--nthreads
to identify the number of threads for parallel processing.
- Use
- Enhanced flexibility in organizing phenotype files:
- Users can specify sample ID column (
--sampleidcol
), phenotype ID column (--phenocol
), and covariate column list (--covarcollist
)
- Users can specify sample ID column (
- Updated output summary statistics to include SE and t-val, with column names adjusted to adhere to GWAS standards.