Try to point right at conda. Im running out of things to try.

Amber-MD · Feb 14, 2025 · c77f5eb · c77f5eb
1 parent 4a7c7e0
commit c77f5eb
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/.github/workflows/merge-gate.yml b/.github/workflows/merge-gate.yml
@@ -156,8 +156,9 @@ jobs:
         export LD_LIBRARY_PATH=$CONDA/lib:${LD_LIBRARY_PATH}
         echo $PATH
         echo $LD_LIBRARY_PATH
+        ls $CONDA/lib
         export MAKE_COMMAND="make -j2"
-        ./configure --buildlibs -openmp -shared gnu
+        ./configure --buildlibs -openmp -shared --with-zlib=$CONDA --with-bzlib=$CONDA --with-hdf5=$CONDA --with-netcdf=$CONDA --with-fftw3=$CONDA gnu
         source cpptraj.sh
         make -j2 libcpptraj
     - name: Install pytraj