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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 23 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 7 3

  4. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating a predicted segmentation of neural arbors by using skeleton-based metrics. This tool detects topological mistakes (i.e. splits and merges) in a predicted segmentatio…

    Python 6

  5. dynamic-foraging-task dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    Python 6 4

  6. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

Repositories

Showing 10 of 308 repositories
  • Aind.Behavior.ExperimentLauncher Public

    Source for for a minimal framework that can be used to build experimental interfaces

    AllenNeuralDynamics/Aind.Behavior.ExperimentLauncher’s past year of commit activity
    Python 0 MIT 0 10 (1 issue needs help) 2 Updated Dec 29, 2024
  • aind-foraging-behavior-bonsai-trigger-pipeline Public
    AllenNeuralDynamics/aind-foraging-behavior-bonsai-trigger-pipeline’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Dec 28, 2024
  • Aind.Behavior.ForceForaging Public

    A repository for the aind-force-foraging experiment

    AllenNeuralDynamics/Aind.Behavior.ForceForaging’s past year of commit activity
    C# 1 MIT 0 5 1 Updated Dec 28, 2024
  • Aind.Behavior.Telekinesis Public

    Task implemention of brain-computer interface experiments

    AllenNeuralDynamics/Aind.Behavior.Telekinesis’s past year of commit activity
    C# 0 MIT 0 1 0 Updated Dec 28, 2024
  • Aind.Behavior.CookieCutter.Template Public

    A cookiecutter template for Aind.Behavior repositories

    AllenNeuralDynamics/Aind.Behavior.CookieCutter.Template’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 28, 2024
  • Aind.Behavior.VrForaging Public

    Task implemention of VR Foraging experiment

    AllenNeuralDynamics/Aind.Behavior.VrForaging’s past year of commit activity
    C# 2 MIT 0 18 1 Updated Dec 28, 2024
  • aind-behavior-curriculum Public

    Starter repository for behavior base primitives.

    AllenNeuralDynamics/aind-behavior-curriculum’s past year of commit activity
    Python 0 MIT 0 19 10 Updated Dec 28, 2024
  • aind-slurm-rest Public

    Auto-generated python code to interface with the slurm cluster

    AllenNeuralDynamics/aind-slurm-rest’s past year of commit activity
    0 MIT 0 1 0 Updated Dec 27, 2024
  • Aind.Behavior.VideoEncodingBenchmarks Public

    A repository with code for benchmarking online video acquisition/encoding pipelines

    AllenNeuralDynamics/Aind.Behavior.VideoEncodingBenchmarks’s past year of commit activity
    C# 0 MIT 0 2 0 Updated Dec 27, 2024
  • Aind.Behavior.CoreAnalysis Public

    A repository with core primitives for analysis shared across `Aind.Behavior` tasks

    AllenNeuralDynamics/Aind.Behavior.CoreAnalysis’s past year of commit activity
    Python 0 MIT 0 5 0 Updated Dec 27, 2024
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