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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 355 152

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 24 14

Repositories

Showing 10 of 421 repositories
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 26 9 294 14 Updated Apr 11, 2025
  • TEM_comms Public

    Pigeon messages for the next generation TEM imaging system

    AllenInstitute/TEM_comms’s past year of commit activity
    Python 1 BSD-3-Clause 2 1 0 Updated Apr 11, 2025
  • AllenInstitute/standard_morph’s past year of commit activity
    Python 0 0 0 0 Updated Apr 11, 2025
  • deep-neurographs Public

    A Python package that corrects split mistakes in a fragmented neuron segmentation using a graph neural network.

    AllenInstitute/deep-neurographs’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Apr 10, 2025
  • openscope_databook Public

    OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈

    AllenInstitute/openscope_databook’s past year of commit activity
    Python 65 22 18 0 Updated Apr 10, 2025
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access’s past year of commit activity
    Jupyter Notebook 63 26 15 5 Updated Apr 10, 2025
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 7 BSD-3-Clause 2 58 3 Updated Apr 10, 2025
  • AllenInstitute/AllenInstituteTaxonomy’s past year of commit activity
    R 2 1 6 0 Updated Apr 10, 2025
  • scrattch.taxonomy Public

    Allen Institute Taxonomy building R package

    AllenInstitute/scrattch.taxonomy’s past year of commit activity
    HTML 1 1 9 1 Updated Apr 10, 2025
  • microns_tutorial Public

    MICrONS databook and analysis tutorials

    AllenInstitute/microns_tutorial’s past year of commit activity
    Jupyter Notebook 2 2 0 0 Updated Apr 10, 2025

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