This is the initial versioned release of the OpenScPCA-analysis repository.
The repository at this stage should be generally complete with respect to infrastructure, but the analysis is still only in the early stages.
With respect to infrastructure, the repository contains the following components:
- detailed documentation in the
docsdirectory explaining how to interact with the OpenScPCA project and how to set up and run analyses (published at https://openscpca.readthedocs.io/) - a
create-analysis-module.pyscript for setting up new analysis modules download-data.pyanddownload-results.pyscripts to download data and results from the OpenScPCA project- template notebooks, scripts, environment files, and Docker images for analysis modules
The repository contains the following analysis modules that are now in a relatively mature state:
hello-Rhello-pythonsimulate-scedoublet-detection
The following additional modules are in active development:
cell-type-ewingsmetacells